Crystallization and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes

Acta Crystallogr D Biol Crystallogr. 2000 Apr;56(Pt 4):492-4. doi: 10.1107/s0907444900001700.

Abstract

Three different crystal forms of complexes between arginyl-tRNA synthetase from the yeast Saccharomyces cerevisae (yArgRS) and the yeast second major tRNA(Arg) (tRNA(Arg)(ICG)) isoacceptor have been crystallized by the hanging-drop vapour-diffusion method in the presence of ammonium sulfate. Crystal form II, which diffracts beyond 2.2 A resolution at the European Synchrotron Radiation Facility ID14-4 beamline, belongs to the orthorhombic space group P2(1)2(1)2, with unit-cell parameters a = 129.64, b = 107.47, c = 71. 38 A. This crystal form presents the highest resolution obtained for an active form of an aminoacyl-tRNA synthetase-tRNA complex. The estimated V(m) of 2.6 A(3) Da(-1) indicates one molecule of complex in the asymmetric unit. The three crystal forms were solved by the molecular-replacement method using the coordinates of the free yArgRS.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arginine-tRNA Ligase / chemistry*
  • Arginine-tRNA Ligase / isolation & purification
  • Arginine-tRNA Ligase / metabolism*
  • Crystallization
  • Crystallography, X-Ray
  • RNA, Fungal / chemistry
  • RNA, Fungal / isolation & purification
  • RNA, Fungal / metabolism
  • RNA, Transfer, Arg / chemistry*
  • RNA, Transfer, Arg / isolation & purification
  • RNA, Transfer, Arg / metabolism*
  • Saccharomyces cerevisiae / enzymology
  • Saccharomyces cerevisiae / genetics

Substances

  • RNA, Fungal
  • RNA, Transfer, Arg
  • Arginine-tRNA Ligase