Sequence organization of barley centromeres

Nucleic Acids Res. 2001 Dec 15;29(24):5029-35. doi: 10.1093/nar/29.24.5029.

Abstract

By sequencing, fingerprinting and in situ hybridization of a centromere-specific large insert clone (BAC 7), the sequence organization of centromeric DNA of barley could be elucidated. Within 23 kb, three copies of the Ty3/gypsy-like retroelement cereba were present. Two elements of approximately 7 kb, arranged in tandem, include long terminal repeats (LTRs) (approximately 1 kb) similar to the rice centromeric retrotransposon RIRE 7 and to the cereal centromeric sequence family, the primer binding site, the complete polygene flanked by untranslated regions, as well as a polypurine tract 5' of the downstream LTR. The high density (approximately 200 elements/centromere) and completeness of cereba elements and the absence of internally deleted elements and solo LTRs from the BAC 7 insert represent unique features of the barley centromeres as compared to those of other cereals. Obviously, the conserved cereba elements together with barley-specific G+C-rich satellite sequences constitute the major components of centromeric DNA in this species.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Blotting, Southern
  • Centromere / genetics*
  • Cloning, Molecular
  • DNA Restriction Enzymes / metabolism
  • DNA, Plant / chemistry
  • DNA, Plant / genetics*
  • DNA, Plant / metabolism
  • Hordeum / genetics*
  • In Situ Hybridization, Fluorescence
  • Molecular Sequence Data
  • Mutagenesis, Insertional
  • Retroelements
  • Sequence Analysis, DNA

Substances

  • DNA, Plant
  • Retroelements
  • DNA Restriction Enzymes

Associated data

  • GENBANK/AY040832
  • GENBANK/AY040833