Side-chain dynamics of the SAP SH2 domain correlate with a binding hot spot and a region with conformational plasticity

J Mol Biol. 2002 Sep 20;322(3):605-20. doi: 10.1016/s0022-2836(02)00803-3.

Abstract

X-linked lymphoproliferative disease is caused by mutations in the protein SAP, which consists almost entirely of a single SH2 domain. SAP interacts with the Tyr281 site of the T<-->B cell signaling protein SLAM via its SH2 domain. Interestingly, binding is not dependent on phosphorylation but does involve interactions with residues N-terminal to the Tyr. We have used 15N and 2H NMR relaxation experiments to investigate the motional properties of the SAP SH2 domain backbone amides and side-chain methyl groups in the free protein and complexes with phosphorylated and non-phosphorylated peptides derived from the Tyr281 site of SLAM. The most mobile methyl groups are in side-chains with large RMSD values between the three crystal structures of SAP, suggesting that fast time-scale dynamics in side-chains is associated with conformational plasticity. The backbone amides of two residues which interact with the C-terminal part of the peptides experience fast time-scale motions in the free SH2 domain that are quenched upon binding of either the phosphorylated or non-phosphorylated peptide. Of most importance, the mobility of methyl groups in and around the binding site for residues in the N-terminus of the peptide is significantly restricted in the complexes, underscoring the dominance of this interaction with SAP and demonstrating a correlation between changes in rapid side-chain motion upon binding with local binding energy.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Carrier Proteins / chemistry*
  • Carrier Proteins / genetics
  • Carrier Proteins / isolation & purification
  • Carrier Proteins / metabolism
  • Humans
  • Intracellular Signaling Peptides and Proteins*
  • Kinetics
  • Ligands
  • Mechanics
  • Models, Molecular
  • Nuclear Magnetic Resonance, Biomolecular
  • Peptide Fragments / chemistry*
  • Peptide Fragments / metabolism
  • Phosphotyrosine / metabolism
  • Protein Binding
  • Protein Folding
  • Signaling Lymphocytic Activation Molecule Associated Protein
  • Thermodynamics
  • Tyrosine / metabolism
  • src Homology Domains*

Substances

  • Carrier Proteins
  • Intracellular Signaling Peptides and Proteins
  • Ligands
  • Peptide Fragments
  • SH2D1A protein, human
  • Signaling Lymphocytic Activation Molecule Associated Protein
  • Phosphotyrosine
  • Tyrosine