Updated Epstein-Barr virus (EBV) DNA sequence and analysis of a promoter for the BART (CST, BARF0) RNAs of EBV

J Gen Virol. 2003 Jun;84(Pt 6):1443-1450. doi: 10.1099/vir.0.19054-0.

Abstract

Two sequences required for activity of the Epstein-Barr virus BART RNA promoter in transfection assays have been identified by site-directed mutagenesis. One contains a consensus AP-1 site; the other has some similarity to Ets and Stat consensus binding sites. Candidate sequences were suggested by mapping a region of unmethylated DNA in EBV around the BART promoter followed by in vivo footprinting the promoter in the C666-1 nasopharyngeal carcinoma cell line, which expresses BART RNAs. The data are presented in the context of a revised EBV DNA sequence, known as EBV wt, that is proposed as a future standard sequence for EBV.

MeSH terms

  • Base Sequence
  • Binding Sites / genetics
  • Consensus Sequence
  • DNA Footprinting
  • DNA Methylation
  • DNA, Viral / genetics*
  • Epstein-Barr Virus Infections / virology
  • Exons
  • Genes, Viral
  • Herpesvirus 4, Human / genetics*
  • Humans
  • Mutagenesis, Site-Directed
  • Nasopharyngeal Neoplasms / virology
  • Promoter Regions, Genetic
  • RNA, Viral / genetics*
  • Tumor Cells, Cultured
  • Viral Proteins / genetics*

Substances

  • DNA, Viral
  • RK-BARF0 protein, Human herpesvirus 4
  • RNA, Viral
  • Viral Proteins