Role of the M-loop and reactive center loop domains in the folding and bridging of nucleosome arrays by MENT

J Biol Chem. 2003 Oct 31;278(44):43384-93. doi: 10.1074/jbc.M307635200. Epub 2003 Aug 19.

Abstract

MENT is a developmentally regulated heterochromatin-associated protein that condenses chromatin in terminally differentiated avian blood cells. Its homology to the serpin protein family suggests that the conserved serpin reactive center loop (RCL) and the unique M-loop are important for its function. To examine the role of these domains, we studied the interaction of wild-type and mutant MENT with naked DNA and biochemically defined nucleosome arrays reconstituted from 12-mer repeats containing nucleosome positioning sequences. Wild-type MENT folded the naked DNA duplexes into closely juxtaposed parallel structures ("tramlines"). Deletion of the M-loop, but not inactivation of the RCL, prevented tramline formation and the cooperative interaction of MENT with DNA. Reconstitution of wild-type MENT with nucleosome arrays caused their tight folding and self-association. M-loop deletion inhibited nucleosome array folding, whereas the inactive RCL mutant was competent to fold the nucleosome arrays, but had a significantly impaired ability to cause their self-association. Bifunctional chemical cross-linking of MENT revealed oligomerization of wild-type MENT in the presence of chromatin and DNA. This oligomerization was severely reduced in the RCL mutant. We propose that the mechanism of MENT-induced heterochromatin formation involves two independent events: bringing together nucleosome linkers within a chromatin fiber and formation of protein bridges between chromatin fibers. Ordered binding of MENT to linker DNA via its unique M-loop domain promotes the folding of chromatin, whereas bridging of chromatin fibers is facilitated by MENT oligomerization mediated by the RCL.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Avian Proteins*
  • Birds
  • Blotting, Western
  • Carbodiimides / pharmacology
  • Chromatin / metabolism
  • Chromosomal Proteins, Non-Histone / chemistry*
  • Chromosomal Proteins, Non-Histone / metabolism*
  • Cross-Linking Reagents / pharmacology
  • DNA / chemistry
  • Dose-Response Relationship, Drug
  • Escherichia coli / metabolism
  • Histones / metabolism
  • Microscopy, Electron
  • Models, Biological
  • Nucleosomes / chemistry*
  • Nucleosomes / metabolism
  • Protein Binding
  • Protein Folding
  • Protein Structure, Tertiary
  • Sea Urchins

Substances

  • Avian Proteins
  • Carbodiimides
  • Chromatin
  • Chromosomal Proteins, Non-Histone
  • Cross-Linking Reagents
  • Histones
  • MENT protein, Gallus gallus
  • Nucleosomes
  • 1-ethyl-3-(3-dimethylaminoethyl)carbodiimide
  • DNA