Identification of trace element-containing proteins in genomic databases

Annu Rev Nutr. 2004:24:579-96. doi: 10.1146/annurev.nutr.24.012003.132241.

Abstract

Development of bioinformatics tools provided researchers with the ability to identify full sets of trace element-containing proteins in organisms for which complete genomic sequences are available. Recently, independent bioinformatics methods were used to identify all, or almost all, genes encoding selenocysteine-containing proteins in human, mouse, and Drosophila genomes, characterizing entire selenoproteomes in these organisms. It also should be possible to search for entire sets of other trace element-associated proteins, such as metal-containing proteins, although methods for their identification are still in development.

Publication types

  • Research Support, U.S. Gov't, P.H.S.
  • Review

MeSH terms

  • Animals
  • Computational Biology*
  • Databases, Nucleic Acid
  • Databases, Protein*
  • Genomics*
  • Humans
  • Proteins / genetics*
  • Proteins / physiology
  • Selenoproteins
  • Trace Elements* / physiology

Substances

  • Proteins
  • Selenoproteins
  • Trace Elements