Conformational changes in CLIP-170 regulate its binding to microtubules and dynactin localization

J Cell Biol. 2004 Sep 27;166(7):1003-14. doi: 10.1083/jcb.200402082. Epub 2004 Sep 20.

Abstract

Cytoplasmic linker protein (CLIP)-170, CLIP-115, and the dynactin subunit p150(Glued) are structurally related proteins, which associate specifically with the ends of growing microtubules (MTs). Here, we show that down-regulation of CLIP-170 by RNA interference results in a strongly reduced accumulation of dynactin at the MT tips. The NH(2) terminus of p150(Glued) binds directly to the COOH terminus of CLIP-170 through its second metal-binding motif. p150(Glued) and LIS1, a dynein-associating protein, compete for the interaction with the CLIP-170 COOH terminus, suggesting that LIS1 can act to release dynactin from the MT tips. We also show that the NH(2)-terminal part of CLIP-170 itself associates with the CLIP-170 COOH terminus through its first metal-binding motif. By using scanning force microscopy and fluorescence resonance energy transfer-based experiments we provide evidence for an intramolecular interaction between the NH(2) and COOH termini of CLIP-170. This interaction interferes with the binding of the CLIP-170 to MTs. We propose that conformational changes in CLIP-170 are important for binding to dynactin, LIS1, and the MT tips.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Motifs / genetics
  • Animals
  • Binding Sites / genetics
  • COS Cells
  • Down-Regulation / genetics
  • Dynactin Complex
  • Microtubule-Associated Proteins / genetics*
  • Microtubule-Associated Proteins / metabolism*
  • Microtubules / genetics
  • Microtubules / metabolism*
  • Microtubules / ultrastructure
  • Neoplasm Proteins
  • Protein Binding / genetics
  • Protein Conformation
  • Protein Structure, Tertiary / genetics
  • Protein Subunits / genetics
  • Protein Subunits / metabolism
  • RNA Interference

Substances

  • Dynactin Complex
  • Microtubule-Associated Proteins
  • Neoplasm Proteins
  • Protein Subunits
  • cytoplasmic linker protein 170