Poly-L-proline type II peptide mimics as probes of the active site occupancy requirements of cGMP-dependent protein kinase

J Pept Res. 2005 Oct;66(4):151-9. doi: 10.1111/j.1399-3011.2005.00280.x.

Abstract

Based on the X-ray crystal structure of cAMP-dependent protein kinase (PKA) with the endogenous inhibitor PKI and the X-ray crystal structure of cyclin-dependent kinase 2 (CDK2) with a substrate peptide, a proposal is put forth that some protein kinases bind peptide substrates in their active sites in the poly-L-proline type II (PPII) conformation. In this work, PPII peptide mimics are evaluated as pseudosubstrate inhibitors of cGMP-dependent protein kinase (PKG) to explore if PKG also binds peptide substrates in the PPII conformation. Inhibition data of our PPII mimetics provide evidence that the P-1, P-2, and P-3 residues of substrate peptides bind in the PPII conformation (phi approximately -75 degrees, psi approximately 145 degrees). In addition, the inhibition data also suggest that the P-1, P-2, and P-3 residues in substrate peptides bind with a gauche(-) chi1 angle.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Catalytic Domain / physiology*
  • Cyclic GMP-Dependent Protein Kinases / chemistry
  • Cyclic GMP-Dependent Protein Kinases / metabolism*
  • Molecular Probes / metabolism*
  • Peptides / metabolism*
  • Protein Structure, Tertiary

Substances

  • Molecular Probes
  • Peptides
  • polyproline
  • Cyclic GMP-Dependent Protein Kinases