Mutation of a conserved tryptophan in the chitin-binding cleft of Serratia marcescens chitinase A enhances transglycosylation

Biosci Biotechnol Biochem. 2006 Jan;70(1):243-51. doi: 10.1271/bbb.70.243.

Abstract

Family 18 chitinases have the signature peptide DGXDXDXE forming the fourth beta-strand in the (beta/alpha)8-barrel of their catalytic domain. The carboxyl-end glutamic acid, E315 in Serratia marcescens chitinase A, serves as the acid/base during chitin hydrolysis, and the side-chain of the preceding aspartic acid, D313, helps to position correctly the N-acetyl moiety of the glycosyl sugar undergoing hydrolysis. Chitin substrates are bound within a long cleft across the top of the barrel, whose floor consists of aromatic residues that hydrophobically stack with every other GlcNAc. Alanine substitution of the conserved Trp167 at the -3 subsite in Serratia marcescens chitinase A enhanced transglycosylation. Higher oligosaccharides were formed from both chitin tetra- and pentasaccharide, and the only hydrolytic product from chitin trisaccharide was the disaccharide. Greater retention of the glycosyl fragment at the active site of the -3 mutant of Serratia marcescens chitinase A might favor transglycosylation due to a stabilized conformation of its D313.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Binding Sites
  • Chitin / metabolism*
  • Chitinases / chemistry*
  • Chitinases / genetics
  • Chitinases / metabolism*
  • Conserved Sequence / genetics*
  • Glycosylation
  • Hydrolysis
  • Kinetics
  • Molecular Structure
  • Mutation / genetics*
  • Serratia marcescens / enzymology*
  • Serratia marcescens / genetics
  • Substrate Specificity
  • Tryptophan / genetics
  • Tryptophan / metabolism*

Substances

  • Chitin
  • Tryptophan
  • Chitinases