Structure of UL18, a peptide-binding viral MHC mimic, bound to a host inhibitory receptor

Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):10095-100. doi: 10.1073/pnas.0804551105. Epub 2008 Jul 15.

Abstract

UL18 is a human cytomegalovirus class I MHC (MHCI) homolog that binds the host inhibitory receptor LIR-1 and the only known viral MHC homolog that presents peptides. The 2.2-A structure of a LIR-1/UL18/peptide complex reveals increased contacts and optimal surface complementarity in the LIR-1/UL18 interface compared with LIR/MHCI interfaces, resulting in a >1,000-fold higher affinity. Despite sharing only approximately 25% sequence identity, UL18's structure and peptide binding are surprisingly similar to host MHCI. The crystal structure suggests that most of the UL18 surface, except where LIR-1 and the host-derived light chain bind, is covered by carbohydrates attached to 13 potential N-glycosylation sites, thereby preventing access to bound peptide and association with most MHCI-binding proteins. The LIR-1/UL18 structure demonstrates how a viral protein evolves from its host ancestor to impede unwanted interactions while preserving and improving its receptor-binding site.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Antigens, CD / chemistry*
  • Antigens, CD / metabolism*
  • Binding Sites / genetics
  • Capsid Proteins / chemistry*
  • Capsid Proteins / genetics
  • Capsid Proteins / metabolism*
  • Crystallography, X-Ray
  • Cytomegalovirus / chemistry*
  • Cytomegalovirus / genetics
  • Cytomegalovirus / metabolism
  • Glycosylation
  • HLA-A2 Antigen / chemistry*
  • HLA-A2 Antigen / genetics
  • HLA-A2 Antigen / metabolism*
  • Humans
  • Leukocyte Immunoglobulin-like Receptor B1
  • Models, Molecular
  • Molecular Mimicry
  • Molecular Sequence Data
  • Multiprotein Complexes
  • Protein Binding
  • Receptors, Immunologic / chemistry*
  • Receptors, Immunologic / metabolism*
  • Receptors, Virus / metabolism*
  • Sequence Homology, Amino Acid

Substances

  • Antigens, CD
  • Capsid Proteins
  • HLA-A2 Antigen
  • LILRB1 protein, human
  • Leukocyte Immunoglobulin-like Receptor B1
  • Multiprotein Complexes
  • Receptors, Immunologic
  • Receptors, Virus
  • VP23 protein, Human herpesvirus 1

Associated data

  • PDB/3D2U