RNA editing of apolipoprotein B mRNA. Sequence specificity determined by in vitro coupled transcription editing

J Biol Chem. 1990 Apr 25;265(12):6811-6.

Abstract

Apolipoprotein (apo) B-48 mRNA is produced by in vivo RNA editing which involves a C----U conversion of the first base of the codon CAA for Gln-2153, changing it to UAA, an in-frame stop codon. We have reproduced the editing reaction in vitro using nuclear extracts. Efficient RNA editing was demonstrated by using apoB mRNA segments as substrate or in a coupled transcription-editing reaction using apoB minigenes as template. ApoB minigenes were constructed by ligating the adenovirus major late promoter to a fragment of apoB-100 DNA containing the editing site and used for the transcription-editing reaction. We defined the sequence specificity of the editing reaction using site-specific single and multiple base mutants constructed by the polymerase chain reaction. Among 22 different mutant apoB-100 minigene constructs containing mutations in the bases immediately flanking the edited C-6666, 20 were edited in the coupled transcription-editing reaction. The results suggest a relatively lax sequence specificity for apoB mRNA editing. Our observation may have important implications for apoB-48 biogenesis as well as for the editing process as a general biologic regulatory mechanism.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Apolipoproteins B / genetics*
  • Base Sequence
  • Cell Nucleus / metabolism
  • Codon / genetics
  • Genes
  • Genetic Variation
  • Humans
  • Liver / metabolism*
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Oligonucleotide Probes
  • Plasmids
  • Polymerase Chain Reaction
  • Promoter Regions, Genetic
  • RNA, Messenger / genetics*
  • Rats
  • Restriction Mapping
  • Transcription, Genetic*

Substances

  • Apolipoproteins B
  • Codon
  • Oligonucleotide Probes
  • RNA, Messenger