Transcriptome analysis reveals novel genes potentially involved in photoperiodic tuberization in potato

Abstract

Potato microtuber produced in vitro provides a model system to investigate photoperiod-dependent tuberization. However, the genes associated with potato tuberization remain to be elucidated. The present research involved three potato clones with distinct tuberization response to changes of photoperiod. Digital Gene Expression (DGE) Tag Profiling analysis of the short-day-sensitive clone identified 2218 genes that were regulated by day length. Both GO and KEGG pathway analysis provided insights into predominant biological processes and pathways, and enabled the selection of 56 genes associated with circadian rhythmicity, signal transduction, and development. Quantitative transcriptional analysis in the selected clones revealed 5 genes potentially associated with photoperiodic tuberization, which were predicted to encode a DOF protein, a blue light receptor, a lectin, a syntaxin-like protein, and a protein with unknown function. Our results strongly suggest that potato tuberization may be largely controlled by the homologs of genes shown to regulate flowering time in other plants.

Keywords: CDF; CYCLING DOF FACTOR; DEG; DGE; DNA binding with one finger; DOF; FMN; JAME; LKP2; LOV; LOV KELCH REPEAT PROTEIN 2; Photoperiod; SNARE; Solanum tuberosum; TA; Transcriptome; Tuber; differentially expressed gene; digital gene expression; flavin mononucleotide; jasmonic acid methyl ester; light-oxygen-voltage; soluble N-ethylmaleimide-sensitive factor attachment protein receptors; tuberonic acid.