Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum)

Jeemeng Lao; Manoj K Sharma; Rita Sharma; Susana M González Fernández-Niño; Jeremy Schmutz; Pamela C Ronald; Joshua L Heazlewood; Benjamin Schwessinger

doi:10.1002/pmic.201400487

Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum)

Proteomics. 2015 Jul;15(13):2286-90. doi: 10.1002/pmic.201400487. Epub 2015 Mar 16.

Authors

Jeemeng Lao¹, Manoj K Sharma^{1

2

3}, Rita Sharma^{1

2

4}, Susana M González Fernández-Niño¹, Jeremy Schmutz^{5

6}, Pamela C Ronald^{1

2}, Joshua L Heazlewood^{1

7}, Benjamin Schwessinger^{1

2}

Affiliations

¹ Joint BioEnergy Institute and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
² Department of Plant Pathology, University of California, Davis, CA, USA.
³ School of Biotechnology, Jawaharlal Nehru University, New Delhi, India.
⁴ School of Life Sciences, Jawaharlal Nehru University, New Delhi, India.
⁵ Department of Energy, Joint Genome Institute, Walnut Creek, CA, USA.
⁶ HudsonAlpha Genome Sequencing Center, Huntsville, AL, USA.
⁷ ARC Centre of Excellence in Plant Cell Walls, School of Botany, The University of Melbourne, Victoria, Australia.

PMID: 25677556
DOI: 10.1002/pmic.201400487

Abstract

The cost-effective production of biofuels from lignocellulosic material will likely require manipulation of plant biomass, specifically cell walls. The North American native prairie grass Panicum virgatum (switchgrass) is seen as a potential biofuel crop with an array of genetic resources currently being developed. We have characterized the endomembrane proteome of switchgrass coleoptiles to provide additional information to the switchgrass community. In total, we identified 1750 unique proteins from two biological replicates. These data have been deposited in the ProteomeXchange with the identifier PXD001351 (http://proteomecentral.proteomexchange.org/dataset/PXD001351).

Keywords: Cell wall; Coleoptile; Endomembrane; Plant proteomics; Switchgrass.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Panicum / genetics*
Panicum / metabolism*
Proteome / metabolism*

Substances

Proteome