Exchange between Escherichia coli polymerases II and III on a processivity clamp

Nucleic Acids Res. 2016 Feb 29;44(4):1681-90. doi: 10.1093/nar/gkv1375. Epub 2015 Dec 10.

Abstract

Escherichia coli has three DNA polymerases implicated in the bypass of DNA damage, a process called translesion synthesis (TLS) that alleviates replication stalling. Although these polymerases are specialized for different DNA lesions, it is unclear if they interact differently with the replication machinery. Of the three, DNA polymerase (Pol) II remains the most enigmatic. Here we report a stable ternary complex of Pol II, the replicative polymerase Pol III core complex and the dimeric processivity clamp, β. Single-molecule experiments reveal that the interactions of Pol II and Pol III with β allow for rapid exchange during DNA synthesis. As with another TLS polymerase, Pol IV, increasing concentrations of Pol II displace the Pol III core during DNA synthesis in a minimal reconstitution of primer extension. However, in contrast to Pol IV, Pol II is inefficient at disrupting rolling-circle synthesis by the fully reconstituted Pol III replisome. Together, these data suggest a β-mediated mechanism of exchange between Pol II and Pol III that occurs outside the replication fork.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • DNA / biosynthesis*
  • DNA / genetics
  • DNA Damage / genetics
  • DNA Polymerase II / chemistry
  • DNA Polymerase II / genetics*
  • DNA Polymerase III / chemistry
  • DNA Polymerase III / genetics*
  • DNA Polymerase beta / chemistry
  • DNA Polymerase beta / genetics*
  • DNA Repair / genetics
  • DNA Replication / genetics
  • Escherichia coli / enzymology
  • Escherichia coli / genetics
  • Multiprotein Complexes / chemistry
  • Multiprotein Complexes / genetics
  • Protein Structure, Tertiary

Substances

  • Multiprotein Complexes
  • DNA
  • DNA Polymerase II
  • DNA Polymerase III
  • DNA Polymerase beta