Escherichia coli 16S rRNA 3'-end formation requires a distal transfer RNA sequence at a proper distance

EMBO J. 1989 Oct;8(10):3159-66. doi: 10.1002/j.1460-2075.1989.tb08470.x.

Abstract

The 16S rRNA species in bacterial precursor rRNAs is followed by two evolutionarily conserved features: (i) a double-stranded stem formed by complementary sequences adjacent to the 5' and 3' ends of the 16S rRNA; and (ii) a 3'-transfer RNA sequence. To assess the possible role of these features, plasmid constructs with precursor-specific features deleted were tested for their capacity to form mature rRNA. Stem-forming sequences were dispensable for both 5' and 3' terminus formation; whereas an intact spacer tRNA positioned greater than 24 nucleotides downstream of the 16S RNA sequence was required for correct 3'-end maturation. These results suggest that spacer tRNA at an appropriate location helps form a conformation obligate for pre-rRNA processing, perhaps by binding to a nascent binding site in preribosomes. Thus, spacer tRNAs may be an obligate participant in ribosome formation.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Base Sequence
  • DNA, Ribosomal / metabolism
  • Escherichia coli / genetics*
  • Escherichia coli / metabolism
  • Exoribonucleases / metabolism
  • Molecular Sequence Data
  • Mutation
  • Nucleic Acid Conformation
  • Promoter Regions, Genetic
  • RNA Precursors / metabolism
  • RNA Processing, Post-Transcriptional*
  • RNA, Ribosomal / biosynthesis*
  • RNA, Ribosomal, 16S / biosynthesis*
  • RNA, Transfer / metabolism*
  • Transcription, Genetic

Substances

  • DNA, Ribosomal
  • RNA Precursors
  • RNA, Ribosomal
  • RNA, Ribosomal, 16S
  • RNA, Transfer
  • Exoribonucleases