MicroRNA-mediated target mRNA cleavage and 3'-uridylation in human cells

Sci Rep. 2016 Jul 21:6:30242. doi: 10.1038/srep30242.

Abstract

MicroRNAs (miRNAs) play an important role in targeted gene silencing by facilitating posttranscriptional and translational repression. However, the precise mechanism of mammalian miRNA-mediated gene silencing remains to be elucidated. Here, we used a stem-loop array reverse-transcription polymerase chain reaction assay to analyse miRNA-induced mRNA recognition, cleavage, posttranscriptional modification, and degradation. We detected endogenous let-7 miRNA-induced and Argonaute-catalysed endonucleolytic cleavage on target mRNAs at various sites within partially paired miRNA:mRNA sequences. Most of the cleaved mRNA 5'-fragments were 3'-oligouridylated by activities of terminal uridylyl transferases (TUTases) in miRNA-induced silencing complexes and temporarily accumulated in the cytosol for 5'-3' degradation or other molecular fates. Some 3'-5' decayed mRNA fragments could also be captured by the miRNA-induced silencing complex stationed at the specific miRNA:mRNA target site and oligouridylated by other TUTases at its proximity without involving Argonaute-mediated RNA cleavage. Our findings provide new insights into the molecular mechanics of mammalian miRNA-mediated gene silencing by coordinated target mRNA recognition, cleavage, uridylation and degradation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Argonaute Proteins / genetics*
  • Argonaute Proteins / metabolism
  • Base Pairing
  • Base Sequence
  • Cell Line, Tumor
  • Epithelial Cells / cytology
  • Epithelial Cells / metabolism*
  • Genes, Reporter
  • Green Fluorescent Proteins / genetics
  • Green Fluorescent Proteins / metabolism
  • HeLa Cells
  • Humans
  • MicroRNAs / genetics*
  • MicroRNAs / metabolism
  • Protein Isoforms
  • RNA Interference*
  • RNA Nucleotidyltransferases / genetics*
  • RNA Nucleotidyltransferases / metabolism
  • RNA Stability
  • RNA, Messenger / genetics*
  • RNA, Messenger / metabolism
  • Uridine Monophosphate / metabolism*

Substances

  • AGO2 protein, human
  • Argonaute Proteins
  • MicroRNAs
  • Protein Isoforms
  • RNA, Messenger
  • enhanced green fluorescent protein
  • mirnlet7 microRNA, human
  • Green Fluorescent Proteins
  • Uridine Monophosphate
  • RNA Nucleotidyltransferases
  • TUT7 protein, human