Re-Evaluation of Reportedly Metal Tolerant Arabidopsis thaliana Accessions

PLoS One. 2016 Jul 28;11(7):e0130679. doi: 10.1371/journal.pone.0130679. eCollection 2016.

Abstract

Santa Clara, Limeport, and Berkeley are Arabidopsis thaliana accessions previously identified as diversely metal resistant. Yet these same accessions were determined to be genetically indistinguishable from the metal sensitive Col-0. We robustly tested tolerance for Zn, Ni and Cu, and genetic relatedness by growing these accessions under a range of Ni, Zn and Cu concentrations for three durations in multiple replicates. Neither metal resistance nor variance in growth were detected between them and Col-0. We re-sequenced the genomes of these accessions and all stocks available for each accession. In all cases they were nearly indistinguishable from the standard laboratory accession Col-0. As Santa Clara was allegedly collected from the Jasper Ridge serpentine outcrop in California, USA we investigated the possibility of extant A. thaliana populations adapted to serpentine soils. Botanically vouchered Arabidopsis accessions in the Jepson database were overlaid with soil maps of California. This provided no evidence of A. thaliana collections from serpentine sites in California. Thus, our work demonstrates that the Santa Clara, Berkeley and Limeport accessions are not metal tolerant, not genetically distinct from Col-0, and that there are no known serpentine adapted populations or accessions of A. thaliana.

MeSH terms

  • Adaptation, Physiological*
  • Arabidopsis / drug effects*
  • Arabidopsis / genetics
  • Arabidopsis / physiology
  • California
  • Genes, Plant
  • Metals / pharmacology*
  • Polymorphism, Single Nucleotide

Substances

  • Metals

Grants and funding

This work was supported by a fellowship from CONICYT Becas Chile 72100511 to MS and analysis tools utilized in this project were developed as part of Bill and Melinda Gates Foundation grant OPP 1052924 to BPD. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.