From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress

Mol Syst Biol. 2017 Dec 21;13(12):961. doi: 10.15252/msb.20177840.

Abstract

Plants have established different mechanisms to cope with environmental fluctuations and accordingly fine-tune their growth and development through the regulation of complex molecular networks. It is largely unknown how the network architectures change and what the key regulators in stress responses and plant growth are. Here, we investigated a complex, highly interconnected network of 20 Arabidopsis transcription factors (TFs) at the basis of leaf growth inhibition upon mild osmotic stress. We tracked the dynamic behavior of the stress-responsive TFs over time, showing the rapid induction following stress treatment, specifically in growing leaves. The connections between the TFs were uncovered using inducible overexpression lines and were validated with transient expression assays. This study resulted in the identification of a core network, composed of ERF6, ERF8, ERF9, ERF59, and ERF98, which is responsible for most transcriptional connections. The analyses highlight the biological function of this core network in environmental adaptation and its redundancy. Finally, a phenotypic analysis of loss-of-function and gain-of-function lines of the transcription factors established multiple connections between the stress-responsive network and leaf growth.

Keywords: growth regulation; mild osmotic stress; short‐term stress response; transcription factors; transcriptional network.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptation, Physiological / drug effects
  • Adaptation, Physiological / genetics
  • Arabidopsis / drug effects
  • Arabidopsis / genetics*
  • Gene Expression Profiling
  • Gene Expression Regulation, Plant / drug effects
  • Gene Regulatory Networks* / drug effects
  • Genes, Plant
  • Gibberellins / biosynthesis
  • Gibberellins / metabolism
  • Mannitol / pharmacology
  • Osmotic Pressure / physiology*
  • Phenotype
  • Plant Leaves / drug effects
  • Plant Leaves / genetics
  • Plant Leaves / growth & development
  • Plants, Genetically Modified
  • Stochastic Processes
  • Stress, Physiological / drug effects
  • Stress, Physiological / genetics*
  • Transcription Factors / metabolism
  • Transcription, Genetic* / drug effects

Substances

  • Gibberellins
  • Transcription Factors
  • Mannitol
  • gibberellic acid