Reporter-based fate mapping in human kidney organoids confirms nephron lineage relationships and reveals synchronous nephron formation

EMBO Rep. 2019 Apr;20(4):e47483. doi: 10.15252/embr.201847483. Epub 2019 Mar 11.

Abstract

Nephron formation continues throughout kidney morphogenesis in both mice and humans. Lineage tracing studies in mice identified a self-renewing Six2-expressing nephron progenitor population able to give rise to the full complement of nephrons throughout kidney morphogenesis. To investigate the origin of nephrons within human pluripotent stem cell-derived kidney organoids, we performed a similar fate-mapping analysis of the SIX2-expressing lineage in induced pluripotent stem cell (iPSC)-derived kidney organoids to explore the feasibility of investigating lineage relationships in differentiating iPSCs in vitro Using CRISPR/Cas9 gene-edited lineage reporter lines, we show that SIX2-expressing cells give rise to nephron epithelial cell types but not to presumptive ureteric epithelium. The use of an inducible (CreERT2) line revealed a declining capacity for SIX2+ cells to contribute to nephron formation over time, but retention of nephron-forming capacity if provided an exogenous WNT signal. Hence, while human iPSC-derived kidney tissue appears to maintain lineage relationships previously identified in developing mouse kidney, unlike the developing kidney in vivo, kidney organoids lack a nephron progenitor niche capable of both self-renewal and ongoing nephrogenesis.

Keywords: CRSIPR/Cas9; fate mapping; kidney organoid; lineage tracing; pluripotent stem cell.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biomarkers
  • CRISPR-Cas Systems
  • Cell Culture Techniques
  • Cell Differentiation
  • Chromosome Mapping*
  • Gene Expression Profiling*
  • Genes, Reporter*
  • Homeodomain Proteins / genetics
  • Humans
  • Nephrons / embryology*
  • Nephrons / metabolism*
  • Nerve Tissue Proteins / genetics
  • Organogenesis / genetics*
  • Organoids
  • Pluripotent Stem Cells / cytology
  • Pluripotent Stem Cells / metabolism
  • Single-Cell Analysis

Substances

  • Biomarkers
  • Homeodomain Proteins
  • Nerve Tissue Proteins
  • SIX2 protein, human