Increasing the coverage of the N-terminome with LysN amino terminal enrichment (LATE)

Methods Enzymol. 2023:686:1-28. doi: 10.1016/bs.mie.2023.04.003. Epub 2023 May 18.

Abstract

The field of N-terminomics has been advancing with the development of novel methods that provide a comprehensive and unbiased view of the N-terminome. Negative selection N-terminomics enables the identification of free and naturally modified protein N-termini. Here, we present a streamlined protocol that combines two negative selection N-terminomics methods, LATE and HYTANE, to increase N-terminome coverage by 1.5-fold compared to using a single methodology. Our protocol includes sample preparation and data analysis of both methods and can be applied to studying the N-terminome of diverse samples. The suggested approach enables researchers to achieve a more detailed and accurate understanding of the N-terminome.

Keywords: HYTANE; LATE; LysN; N-terminomics; Peptidyl-Lys metalloendopeptidase.

MeSH terms

  • Analytic Sample Preparation Methods
  • Cell Line
  • Data Analysis
  • Humans
  • Isotope Labeling / methods
  • Lysine* / analysis
  • Lysine* / chemistry
  • Peptide Chain Elongation, Translational
  • Proteins* / analysis
  • Proteins* / chemistry
  • Proteome* / analysis
  • Proteome* / chemistry
  • Proteome* / isolation & purification
  • Proteomics* / methods

Substances

  • Proteome
  • Proteins
  • Lysine