Understanding variants of unknown significance: the computational frontier

Oncologist. 2024 Aug 5;29(8):653-657. doi: 10.1093/oncolo/oyae103.

Abstract

The rapid advancement of sequencing technologies has led to the identification of numerous mutations in cancer genomes, many of which are variants of unknown significance (VUS). Computational models are increasingly being used to predict the functional impact of these mutations, in both coding and noncoding regions. Integration of these models with emerging genomic datasets will refine our understanding of mutation effects and guide clinical decision making. Future advancements in modeling protein interactions and transcriptional regulation will further enhance our ability to interpret VUS. Periodic incorporation of these developments into VUS reclassification practice has the potential to significantly improve personalized cancer care.

Keywords: cancer genomics; computational biology; machine learning; somatic variants.

Publication types

  • Review

MeSH terms

  • Computational Biology / methods
  • Genetic Variation
  • Genomics / methods
  • Humans
  • Mutation
  • Neoplasms* / genetics