Cancer cell sedimentation in 3D cultures reveals active migration regulated by self-generated gradients and adhesion sites

PLoS Comput Biol. 2024 Jun 11;20(6):e1012112. doi: 10.1371/journal.pcbi.1012112. eCollection 2024 Jun.

Abstract

Cell sedimentation in 3D hydrogel cultures refers to the vertical migration of cells towards the bottom of the space. Understanding this poorly examined phenomenon may allow us to design better protocols to prevent it, as well as provide insights into the mechanobiology of cancer development. We conducted a multiscale experimental and mathematical examination of 3D cancer growth in triple negative breast cancer cells. Migration was examined in the presence and absence of Paclitaxel, in high and low adhesion environments and in the presence of fibroblasts. The observed behaviour was modeled by hypothesizing active migration due to self-generated chemotactic gradients. Our results did not reject this hypothesis, whereby migration was likely to be regulated by the MAPK and TGF-β pathways. The mathematical model enabled us to describe the experimental data in absence (normalized error<40%) and presence of Paclitaxel (normalized error<10%), suggesting inhibition of random motion and advection in the latter case. Inhibition of sedimentation in low adhesion and co-culture experiments further supported the conclusion that cells actively migrated downwards due to the presence of signals produced by cells already attached to the adhesive glass surface.

MeSH terms

  • Cell Adhesion* / physiology
  • Cell Culture Techniques, Three Dimensional / methods
  • Cell Line, Tumor
  • Cell Movement* / physiology
  • Chemotaxis / physiology
  • Computational Biology
  • Fibroblasts / physiology
  • Humans
  • Models, Biological
  • Paclitaxel* / pharmacology
  • Triple Negative Breast Neoplasms / pathology

Substances

  • Paclitaxel

Grants and funding

This study was supported by Stavros Niarchos Foundation Fellowship (F237055R00) (awarded to NMD) Werner Graupe (F202955R00) (awarded to NMD), McGill (90025) (awarded to both NMD, SFT), Compute Canada (RRG # 3975 awarded to both NMD, GDM), FRQNT (291010) (awarded to SFT), Cyprus Research and Innovation Foundation (Project: INTERNATIONAL/OTHER/0118/0018) (https://www.research.org.cy/en/) (awarded to GDM), and Natural Sciences and Engineering Research Council of Canada (Discovery grant 34362) (awarded to GDM). The funders had no role in the study design, data collection and analysis, or preparation of the manuscript.