A modified glycosylase base editor without predictable DNA off-target effects

FEBS Lett. 2024 Oct;598(20):2557-2565. doi: 10.1002/1873-3468.14970. Epub 2024 Jun 30.

Abstract

Glycosylase base editor (GBE) can induce C-to-G transversion in mammalian cells, showing great promise for the treatment of human genetic disorders. However, the limited efficiency of transversion and the possibility of off-target effects caused by Cas9 restrict its potential clinical applications. In our recent study, we have successfully developed TaC9-CBE and TaC9-ABE by separating nCas9 and deaminase, which eliminates the Cas9-dependent DNA off-target effects without compromising editing efficiency. We developed a novel GBE called TaC9-GBEYE1, which utilizes the deaminase and UNG-nCas9 guided by TALE and sgRNA, respectively. TaC9-GBEYE1 showed comparable levels of on-target editing efficiency to traditional GBE at 19 target sites, without any off-target effects caused by Cas9 or TALE. The TaC9-GBEYE1 is a safe tool for gene therapy.

Keywords: Cas9; TALE; TaC9; glycosylase base editor; off‐target.

MeSH terms

  • Animals
  • CRISPR-Associated Protein 9* / genetics
  • CRISPR-Associated Protein 9* / metabolism
  • CRISPR-Cas Systems*
  • DNA / genetics
  • DNA / metabolism
  • DNA Glycosylases / genetics
  • DNA Glycosylases / metabolism
  • Gene Editing* / methods
  • Humans
  • RNA, Guide, CRISPR-Cas Systems / genetics
  • RNA, Guide, CRISPR-Cas Systems / metabolism

Substances

  • CRISPR-Associated Protein 9
  • DNA Glycosylases
  • DNA
  • RNA, Guide, CRISPR-Cas Systems