Disparate Pathways for Extrachromosomal DNA Biogenesis and Genomic DNA Repair

Cancer Discov. 2025 Jan 13;15(1):69-82. doi: 10.1158/2159-8290.CD-23-1117.

Abstract

Our study harnesses a CRISPR-based method to examine ecDNA biogenesis, uncovering efficient circularization between double-strand breaks. ecDNAs and their corresponding chromosomal scars can form via nonhomologous end joining or microhomology-mediated end joining, but the ecDNA and scar formation processes are distinct. Based on our findings, we establish a mechanistic model of excisional ecDNA formation.

MeSH terms

  • CRISPR-Cas Systems
  • DNA Breaks, Double-Stranded
  • DNA End-Joining Repair
  • DNA Repair*
  • DNA, Circular* / genetics
  • Humans

Substances

  • DNA, Circular