The Cullin3-Rbx1-KLHL9 E3 ubiquitin ligase complex ubiquitinates Rheb and supports amino acid-induced mTORC1 activation

Cell Rep. 2025 Jan 28;44(1):115101. doi: 10.1016/j.celrep.2024.115101. Epub 2024 Dec 20.

Abstract

Mechanistic target of rapamycin complex 1 (mTORC1) is recruited to the lysosomal membrane by the active Rag heterodimer, where mTORC1 interacts with active Rheb for its activation. It has been shown that polyubiquitination of Rheb is crucial for enhancing its interaction with mTORC1 on the lysosome. However, the specific ubiquitin ligases for Rheb, which promotes mTORC1 activation, remain elusive. We report that the CUL3-RBX1-KLHL9 E3 ubiquitin ligase complex is translocated to the lysosome and ubiquitinates Rheb in response to amino acid stimulation. KLHL9 serves as an essential adaptor for CUL3-RBX1 to target Rheb on the lysosome. Deleting either CUL3, RBX1, or KLHL9 diminishes Rheb ubiquitination and reduces amino acid-induced mTORC1 activation without impacting lysosomal mTORC1 localization or Akt activity. Thus, the CUL3-RBX1-KLHL9 complex functions as a mTORC1 activator by acting as an E3 ubiquitin ligase for Rheb and supports amino acid-induced mTORC1 activation.

Keywords: CP: Cell biology; CUL3; KLHL9; Rheb; lysosome; mTORC1; ubiquitination.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Adaptor Proteins, Signal Transducing* / metabolism
  • Amino Acids* / metabolism
  • Amino Acids* / pharmacology
  • Animals
  • Carrier Proteins* / genetics
  • Carrier Proteins* / metabolism
  • Cullin Proteins* / genetics
  • Cullin Proteins* / metabolism
  • HEK293 Cells
  • Humans
  • Lysosomes / metabolism
  • Mechanistic Target of Rapamycin Complex 1* / metabolism
  • Mice
  • Ras Homolog Enriched in Brain Protein* / metabolism
  • Ubiquitin-Protein Ligases* / metabolism
  • Ubiquitination / drug effects

Substances

  • Mechanistic Target of Rapamycin Complex 1
  • Cullin Proteins
  • Ras Homolog Enriched in Brain Protein
  • Amino Acids
  • Carrier Proteins
  • Adaptor Proteins, Signal Transducing
  • Ubiquitin-Protein Ligases
  • CUL3 protein, human
  • RBX1 protein, human
  • Cul3 protein, mouse