A ribosome-associating chaperone mediates GTP-driven vectorial folding of nascent eEF1A

Nat Commun. 2025 Feb 3;16(1):1277. doi: 10.1038/s41467-025-56489-3.

Abstract

Eukaryotic translation elongation factor 1A (eEF1A) is a highly abundant, multi-domain GTPase. Post-translational steps essential for eEF1A biogenesis are carried out by bespoke chaperones but co-translational mechanisms tailored to eEF1A folding remain unexplored. Here, we use AlphaPulldown to identify Ypl225w (also known as Chp1, Chaperone 1 for eEF1A) as a conserved yeast protein predicted to stabilize the N-terminal, GTP-binding (G) domain of eEF1A against its misfolding propensity, as predicted by computational simulations and validated by microscopy analysis of ypl225wΔ cells. Proteomics and biochemical reconstitution reveal that Ypl225w functions as a co-translational chaperone by forming dual interactions with the eEF1A G domain nascent chain and the UBA domain of ribosome-bound nascent polypeptide-associated complex (NAC). Lastly, we show that Ypl225w primes eEF1A nascent chains for binding to GTP as part of a folding mechanism tightly coupled to chaperone recycling. Our work shows that an ATP-independent chaperone can drive vectorial folding of nascent chains by co-opting G protein nucleotide binding.

MeSH terms

  • Guanosine Triphosphate* / metabolism
  • Molecular Chaperones* / genetics
  • Molecular Chaperones* / metabolism
  • Peptide Elongation Factor 1* / chemistry
  • Peptide Elongation Factor 1* / genetics
  • Peptide Elongation Factor 1* / metabolism
  • Protein Binding
  • Protein Domains
  • Protein Folding
  • Ribosomes* / metabolism
  • Saccharomyces cerevisiae Proteins* / chemistry
  • Saccharomyces cerevisiae Proteins* / genetics
  • Saccharomyces cerevisiae Proteins* / metabolism
  • Saccharomyces cerevisiae* / genetics
  • Saccharomyces cerevisiae* / metabolism

Substances

  • Peptide Elongation Factor 1
  • Saccharomyces cerevisiae Proteins
  • Guanosine Triphosphate
  • Molecular Chaperones