The PRC2.1 subcomplex opposes G1 progression through regulation of CCND1 and CCND2

Elife. 2025 Feb 4:13:RP97577. doi: 10.7554/eLife.97577.

Abstract

Progression through the G1 phase of the cell cycle is the most highly regulated step in cellular division. We employed a chemogenetic approach to discover novel cellular networks that regulate cell cycle progression. This approach uncovered functional clusters of genes that altered sensitivity of cells to inhibitors of the G1/S transition. Mutation of components of the Polycomb Repressor Complex 2 rescued proliferation inhibition caused by the CDK4/6 inhibitor palbociclib, but not to inhibitors of S phase or mitosis. In addition to its core catalytic subunits, mutation of the PRC2.1 accessory protein MTF2, but not the PRC2.2 protein JARID2, rendered cells resistant to palbociclib treatment. We found that PRC2.1 (MTF2), but not PRC2.2 (JARID2), was critical for promoting H3K27me3 deposition at CpG islands genome-wide and in promoters. This included the CpG islands in the promoter of the CDK4/6 cyclins CCND1 and CCND2, and loss of MTF2 lead to upregulation of both CCND1 and CCND2. Our results demonstrate a role for PRC2.1, but not PRC2.2, in antagonizing G1 progression in a diversity of cell linages, including chronic myeloid leukemia (CML), breast cancer, and immortalized cell lines.

Keywords: D-type cyclins; cell biology; cell cycle; genetics; genomics; human; molecular biology; palbociclib.

MeSH terms

  • Cell Line, Tumor
  • Cell Proliferation
  • Cyclin D1* / genetics
  • Cyclin D1* / metabolism
  • Cyclin D2* / genetics
  • Cyclin D2* / metabolism
  • G1 Phase*
  • Humans
  • Piperazines / pharmacology
  • Polycomb Repressive Complex 2* / genetics
  • Polycomb Repressive Complex 2* / metabolism
  • Pyridines / pharmacology

Substances

  • Cyclin D1
  • Cyclin D2
  • CCND1 protein, human
  • CCND2 protein, human
  • Polycomb Repressive Complex 2
  • palbociclib
  • Piperazines
  • Pyridines