β-amino acid substitution in the SIINFEKL antigen alters immunological recognition

Cancer Biol Ther. 2025 Dec;26(1):2486141. doi: 10.1080/15384047.2025.2486141. Epub 2025 Apr 8.

Abstract

Background: Peptide vaccines offer a direct way to initiate an immunogenic response to a defined antigen epitope. However, peptide vaccines are unstable in vivo, subject to rapid enzymatic proteolysis. Replacement of an α-amino acid residue with a homologous β-amino acid residue (native side chain, but backbone extended by a single CH2 unit) impairs proteolysis at nearby amide bonds. Therefore, antigen analogues containing α-to-β replacements have been examined for functional mimicry of native all-α antigens. Another group previously took this approach in the ovalbumin (OVA) antigen model by evaluating single α-to-β analogues of the murine major histocompatibility complex (MHC) I-restricted peptide SIINFEKL.

Methods: We re-examined this set of α/β SIINFEKL antigens. We tested the susceptibility to proteolysis in mouse serum and their ability to activate OVA-antigen-specific CD8 T cells in vitro. Additionally, we tested the α/β antigens in vivo for their ability to induce an antigen-specific immunogenic response in naïve mice and in OVA-expressing tumor-bearing mice.

Results: The α/β antigens were comparable to the native antigen in their susceptibility to proteolysis in serum. Each α/β antigen was capable of activating antigen-specific CD8 T cells in vitro. However, antigen-specific CD8 T cells induced against α/β antigens in vivo were not cross-reactive to the native antigen. Moreover, immunization with α/β analogues did not elicit anti-tumor effects in tumor-bearing mice.

Conclusions: We conclude that even though α/β analogues of the SIINFEKL antigen can elicit a T cell-based response, this class of backbone-modified peptides is not promising from the perspective of antitumor vaccine development.

Keywords: CD8 T cells; MHC I; Peptide vaccines; proteolysis-resistant peptides; β-amino acid substitutions.

MeSH terms

  • Amino Acid Substitution*
  • Animals
  • CD8-Positive T-Lymphocytes / immunology
  • Cancer Vaccines / immunology
  • Female
  • Humans
  • Mice
  • Mice, Inbred C57BL
  • Ovalbumin* / genetics
  • Ovalbumin* / immunology
  • Peptide Fragments* / genetics
  • Peptide Fragments* / immunology

Substances

  • Ovalbumin
  • Peptide Fragments
  • Cancer Vaccines