Efflux pumps and membrane permeability contribute to intrinsic antibiotic resistance in Mycobacterium abscessus

PLoS Pathog. 2025 Apr 10;21(4):e1013027. doi: 10.1371/journal.ppat.1013027. eCollection 2025 Apr.

Abstract

Mycobacterium abscessus is a pulmonary pathogen that exhibits intrinsic resistance to antibiotics, but the factors driving this resistance are incompletely understood. Insufficient intracellular drug accumulation could explain broad-spectrum resistance, but whether antibiotics fail to accumulate in M. abscessus and the mechanisms required for drug exclusion remain poorly understood. We measured antibiotic accumulation in M. abscessus using mass spectrometry and found a wide range of drug accumulation across clinically relevant antibiotics. Of these compounds, linezolid accumulates the least, suggesting that inadequate uptake impacts its efficacy. We utilized transposon mutagenesis screening to identify genes that cause linezolid resistance and found multiple transporters that promote membrane permeability or efflux, including an uncharacterized protein that effluxes linezolid and several chemically related antibiotics. This demonstrates that membrane permeability and drug efflux are critical mechanisms of antibiotic resistance in M. abscessus and suggests that targeting membrane transporters could potentiate the efficacy of certain antibiotics.

MeSH terms

  • Anti-Bacterial Agents* / pharmacology
  • Bacterial Proteins* / genetics
  • Bacterial Proteins* / metabolism
  • Cell Membrane Permeability* / drug effects
  • Cell Membrane Permeability* / physiology
  • Drug Resistance, Bacterial*
  • Humans
  • Linezolid / pharmacology
  • Membrane Transport Proteins* / genetics
  • Membrane Transport Proteins* / metabolism
  • Microbial Sensitivity Tests
  • Mycobacterium Infections, Nontuberculous* / drug therapy
  • Mycobacterium Infections, Nontuberculous* / metabolism
  • Mycobacterium Infections, Nontuberculous* / microbiology
  • Mycobacterium abscessus* / drug effects
  • Mycobacterium abscessus* / genetics
  • Mycobacterium abscessus* / metabolism

Substances

  • Anti-Bacterial Agents
  • Membrane Transport Proteins
  • Linezolid
  • Bacterial Proteins