Permeability selection of biologically relevant membranes matches the stereochemistry of life on Earth

PLoS Biol. 2025 May 20;23(5):e3003155. doi: 10.1371/journal.pbio.3003155. eCollection 2025 May.

Abstract

Early in the evolution of life, a proto-metabolic network was encapsulated within a membrane compartment. The permeability characteristics of the membrane determined several key functions of this network by determining which compounds could enter the compartment and which compounds could not. One key feature of known life is the utilization of right-handed d-ribose and d-deoxyribose sugars and left-handed l-amino acid stereochemical isomers (enantiomers); however, it is not clear why life adopted this specific chirality. Generally, archaea have l-phospholipid membrane chemistries and bacteria and eukaryotes have d-phospholipid membrane chemistries. We previously demonstrated that an l-archaeal and a d-intermediate membrane mimic, bearing a mixture of bacterial and archaeal lipid characteristics (a 'hybrid' membrane), displayed increased permeability for several key compounds compared to bacterial-like membranes. Here, we investigate if these membranes can drive stereochemical selection on pentose sugars, hexose sugars, and amino acids. Using permeability assays of homogenous unilamellar vesicles, we demonstrate that both membranes select for d-ribose and d-deoxyribose sugars while the hybrid membrane uniquely selects for a reduced alphabet of l-amino acids. This repertoire includes alanine, the plausible first l-amino acid utilized. We conclude such compartments could provide stereochemical compound selection matching those used by the core metabolism of life.

MeSH terms

  • Amino Acids / chemistry
  • Amino Acids / metabolism
  • Archaea / metabolism
  • Bacteria / metabolism
  • Cell Membrane Permeability*
  • Cell Membrane* / chemistry
  • Cell Membrane* / metabolism
  • Deoxyribose / chemistry
  • Deoxyribose / metabolism
  • Earth, Planet
  • Origin of Life
  • Permeability
  • Phospholipids / chemistry
  • Phospholipids / metabolism
  • Ribose / chemistry
  • Ribose / metabolism
  • Stereoisomerism

Substances

  • Amino Acids
  • Ribose
  • Deoxyribose
  • Phospholipids