1 Institute of Computational Biology, Helmholtz Munich, Neuherberg, Germany.
2 Institute of Lung Health & Immunity, Helmholtz Munich; Member of the German Center for Lung Research (DZL), Munich, Germany.
3 Immunai, New York, USA.
4 NVIDIA, Santa Clara, CA, USA.
5 Data Intuitive, Lebbeke, Belgium.
6 Data Mining and Modelling for Biomedicine group, VIB Center for Inflammation Research, Ghent, Belgium.
7 Department of Applied Mathematics, Computer Science, and Statistics, Ghent University, Ghent, Belgium.
8 Institute of Clinical Chemistry and Pathobiochemistry, School of Medicine, Technical University of Munich, Munich, Germany.
9 TUM School of Life Sciences Weihenstephan, Technical University of Munich, Munich, Germany.
10 Division of Pulmonary and Critical Care Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
11 Department of Mathematics, School of Computing, Information and Technology, Technical University of Munich, Munich, Germany.
12 Interdepartmental Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA.
13 Faculty of Medicine and Heidelberg University Hospital, Institute for Computational Biomedicine, Heidelberg University, Heidelberg, Germany.
14 Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA.
15 Broad Institute of MIT and Harvard, Cambridge, MA, USA.
16 Molecular Pathology Unit, Center for Cancer Research, Massachusetts General Hospital, Boston, MA, USA.
17 Department of Computer Science, Yale University, New Haven, CT, USA.
18 Genentech Inc, South San Francisco, CA, USA.
19 Gene Technology, Royal Institute of Technology (KTH), Stockholm, Sweden.
20 Science for Life Laboratory (SciLifeLab), Solna, Sweden.
21 Wellcome Sanger Institute, Cambridge, UK.
22 Basic Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
23 Computational Biology Program, Public Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
24 Translational Data Science IRC, Fred Hutchinson Cancer Center, Seattle, WA, USA.
25 Apple, Paris, France.
26 Data Sciences Platform, Chan Zuckerberg Biohub, San Francisco, CA, USA.
27 Bridge Bio Pharma, Palo Alto, CA, USA.
28 Cellarity, Inc, Somerville, MA, USA.
29 Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA.
30 Insitro, South San Francisco, USA.
31 VIB Center for AI & Computational Biology (VIB.AI), Ghent, Belgium.
32 Institute of Computational Biology, Helmholtz Munich, Neuherberg, Germany. fabian.theis@helmholtz-munich.de.
33 Department of Mathematics, School of Computing, Information and Technology, Technical University of Munich, Munich, Germany. fabian.theis@helmholtz-munich.de.
34 Cellular Genetics Programme, Wellcome Sanger Institute, Hinxton, UK. fabian.theis@helmholtz-munich.de.
35 Interdepartmental Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA. smita.krishnaswamy@yale.edu.
36 Department of Computer Science, Yale University, New Haven, CT, USA. smita.krishnaswamy@yale.edu.
37 Department of Genetics, Yale University, New Haven, CT, USA. smita.krishnaswamy@yale.edu.