Clinical impact of pharmacogenetic risk variants in a large chinese cohort

Nat Commun. 2025 Jul 9;16(1):6344. doi: 10.1038/s41467-025-61644-x.

Abstract

Incorporating pharmacogenetics into clinical practice promises to improve therapeutic outcomes by optimizing drug selection and dosage based on genetic factors affecting drug response. A key advantage of PGx-guided therapy is to decrease the likelihood of adverse events. To evaluate the clinical impact of PGx risk variants, we performed a retrospective study using genetic and clinical data from the largest Han Chinese cohort, comprising 486,956 individuals, assembled by the Taiwan Precision Medicine Initiative. We found that nearly all participants carried at least one genetic variant that could affect drug response, with many carrying multiple risk variants. Here we show the detailed analyses of four gene-drug pairs, azathioprine (NUDT15/TPMT), clopidogrel (CYP2C19), statins (ABCG2/CYP2C9/SLCO1B1), and NSAIDs (CYP2C9), for which sufficient data exists for statistical power. While the results validate previous findings that PGx risk variants are significantly associated with drug-related adverse events or ineffectiveness, the excess risk of adverse events or lack of efficacy is small compared to that found in those without the PGx risk variants, and most patients with PGx variants do not suffer from adverse events. Our results point to the complexity of implementing PGx in clinical practice and the need for integrative approaches to optimize precision medicine.

MeSH terms

  • ATP Binding Cassette Transporter, Subfamily G, Member 2 / genetics
  • Adult
  • Aged
  • Anti-Inflammatory Agents, Non-Steroidal / adverse effects
  • Anti-Inflammatory Agents, Non-Steroidal / therapeutic use
  • Azathioprine / adverse effects
  • Azathioprine / therapeutic use
  • Clopidogrel / adverse effects
  • Clopidogrel / therapeutic use
  • Cohort Studies
  • Cytochrome P-450 CYP2C19 / genetics
  • Cytochrome P-450 CYP2C9 / genetics
  • East Asian People* / genetics
  • Female
  • Humans
  • Hydroxymethylglutaryl-CoA Reductase Inhibitors / adverse effects
  • Hydroxymethylglutaryl-CoA Reductase Inhibitors / therapeutic use
  • Liver-Specific Organic Anion Transporter 1 / genetics
  • Male
  • Methyltransferases / genetics
  • Middle Aged
  • Neoplasm Proteins
  • Pharmacogenetics*
  • Pharmacogenomic Variants*
  • Polymorphism, Single Nucleotide
  • Precision Medicine
  • Retrospective Studies
  • Taiwan

Substances

  • ABCG2 protein, human
  • Anti-Inflammatory Agents, Non-Steroidal
  • ATP Binding Cassette Transporter, Subfamily G, Member 2
  • Azathioprine
  • Clopidogrel
  • CYP2C19 protein, human
  • CYP2C9 protein, human
  • Cytochrome P-450 CYP2C19
  • Cytochrome P-450 CYP2C9
  • Hydroxymethylglutaryl-CoA Reductase Inhibitors
  • Liver-Specific Organic Anion Transporter 1
  • Methyltransferases
  • SLCO1B1 protein, human
  • Neoplasm Proteins

Supplementary concepts

  • Chinese people