Initiation sites for discontinuous DNA synthesis of bacteriophage T7

Proc Natl Acad Sci U S A. 1981 Feb;78(2):903-7. doi: 10.1073/pnas.78.2.903.

Abstract

We have previously shown that the discontinuous replication of bacteriophage T7 DNA is primed by tetraribonucleotides (major component) or pentaribonucleotides. Both tetramers and pentamers start with pppA-C and are rich in A and C at the third and fourth nucleotides. In this study, the sites of transition from primer RNA to DNA in vivo have been located on a 340-nucleotide segment of the H strand of the T7 genome by 32P-labeling in vitro of the 5'-hydroxyl ends of DNA resulting from alkaline hydrolysis of RNA-linked T7 DNA fragments. Five strong transition sites were detected with a common sequence 5'-G-A-C-N1-N2-N3-N4-3', in which N1 was either C or A, N2 ws A, C, or G, and either N3 or N4 was the nucleotide for the switchover to DNA synthesis. We conclude that the complementary sequence 3'-C-T-G-G/T-N'2-(N'3)-5' in the template strand is the most frequently used signal for synthesis of primer RNA. Whereas primer-RNA synthesis starts at a precisely defined nucleotide, the transition to DNA synthesis varies within two nucleotides. Because the observed signal sequence would be present on a statistical basis once per 128 nucleotides, only about 10% of the existing signals are used for primer synthesis in each round of replication so that nascent fragments 1000-2000 long result. This provides an unexpected flexibility for RNA priming of DNA synthesis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • DNA Replication*
  • DNA Restriction Enzymes
  • DNA, Bacterial / biosynthesis*
  • DNA, Viral / biosynthesis*
  • Escherichia coli / metabolism*
  • Nucleic Acid Hybridization
  • T-Phages / metabolism*
  • Virus Replication

Substances

  • DNA, Bacterial
  • DNA, Viral
  • DNA Restriction Enzymes

Associated data

  • GENBANK/V01123