Rhodopsin's secondary structure revisited: assignment of structural elements

Biochem Biophys Res Commun. 1994 Feb 15;198(3):1040-5. doi: 10.1006/bbrc.1994.1148.

Abstract

FT-IR spectroscopy has been applied to study the secondary structure of rhodopsin in dehydrated films of bovine rod photoreceptor membranes. Curve fitting analysis of the amide I band around 1658 cm-1 compares well with data obtained from samples in the hydrated state. Repeating this analysis on samples, treated with proteinase K or thermolysin, secondary structural elements at the cytoplasmic side of the photoreceptor membrane can be located. We present evidence for the location of a beta-sheet and a beta-turn near the lipid anchor in the C-terminal region of the protein, and for an alpha-helical structure in the third cytoplasmic loop.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Endopeptidase K
  • Protein Structure, Secondary*
  • Rhodopsin / chemistry*
  • Rhodopsin / isolation & purification
  • Rod Cell Outer Segment / metabolism
  • Serine Endopeptidases
  • Spectroscopy, Fourier Transform Infrared
  • Thermolysin

Substances

  • Rhodopsin
  • Serine Endopeptidases
  • Endopeptidase K
  • Thermolysin