McLaughlin WA - Search Results

1

A structure-based method for identifying DNA-binding proteins and their sites of DNA-interaction.

McLaughlin WA, Kulp DW, de la Cruz J, Lu XJ, Lawson CL, Berman HM. McLaughlin WA, et al. J Struct Funct Genomics. 2004;5(4):255-65. doi: 10.1007/s10969-005-4902-1. J Struct Funct Genomics. 2004. PMID: 15704013

2

Statistical models for discerning protein structures containing the DNA-binding helix-turn-helix motif.

McLaughlin WA, Berman HM. McLaughlin WA, et al. J Mol Biol. 2003 Jun 27;330(1):43-55. doi: 10.1016/s0022-2836(03)00532-1. J Mol Biol. 2003. PMID: 12818201

3

The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods.

Gabanyi MJ, Adams PD, Arnold K, Bordoli L, Carter LG, Flippen-Andersen J, Gifford L, Haas J, Kouranov A, McLaughlin WA, Micallef DI, Minor W, Shah R, Schwede T, Tao YP, Westbrook JD, Zimmerman M, Berman HM. Gabanyi MJ, et al. Among authors: mclaughlin wa. J Struct Funct Genomics. 2011 Jul;12(2):45-54. doi: 10.1007/s10969-011-9106-2. Epub 2011 Apr 7. J Struct Funct Genomics. 2011. PMID: 21472436 Free PMC article.

4

A new approach to assess and predict the functional roles of proteins across all known structures.

Julfayev ES, McLaughlin RJ, Tao YP, McLaughlin WA. Julfayev ES, et al. Among authors: mclaughlin wa. J Struct Funct Genomics. 2011 Mar;12(1):9-20. doi: 10.1007/s10969-011-9105-3. Epub 2011 Mar 29. J Struct Funct Genomics. 2011. PMID: 21445639 Free PMC article.

5

Characterization of domain-peptide interaction interface: a generic structure-based model to decipher the binding specificity of SH3 domains.

Hou T, Xu Z, Zhang W, McLaughlin WA, Case DA, Xu Y, Wang W. Hou T, et al. Among authors: mclaughlin wa. Mol Cell Proteomics. 2009 Apr;8(4):639-49. doi: 10.1074/mcp.M800450-MCP200. Epub 2008 Nov 20. Mol Cell Proteomics. 2009. PMID: 19023120 Free PMC article.

6

KB-Rank: efficient protein structure and functional annotation identification via text query.

Julfayev ES, McLaughlin RJ, Tao YP, McLaughlin WA. Julfayev ES, et al. Among authors: mclaughlin wa. J Struct Funct Genomics. 2012 Jun;13(2):101-10. doi: 10.1007/s10969-012-9125-7. Epub 2012 Jan 21. J Struct Funct Genomics. 2012. PMID: 22270457 Free PMC article.

7

Prediction of binding sites of peptide recognition domains: an application on Grb2 and SAP SH2 domains.

McLaughlin WA, Hou T, Wang W. McLaughlin WA, et al. J Mol Biol. 2006 Apr 7;357(4):1322-34. doi: 10.1016/j.jmb.2006.01.005. Epub 2006 Jan 26. J Mol Biol. 2006. PMID: 16476443

8

Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain.

Hou T, Chen K, McLaughlin WA, Lu B, Wang W. Hou T, et al. Among authors: mclaughlin wa. PLoS Comput Biol. 2006 Jan;2(1):e1. doi: 10.1371/journal.pcbi.0020001. Epub 2006 Jan 27. PLoS Comput Biol. 2006. PMID: 16446784 Free PMC article.

9

Quantification of the impact of PSI:Biology according to the annotations of the determined structures.

DePietro PJ, Julfayev ES, McLaughlin WA. DePietro PJ, et al. Among authors: mclaughlin wa. BMC Struct Biol. 2013 Oct 21;13:24. doi: 10.1186/1472-6807-13-24. BMC Struct Biol. 2013. PMID: 24139526 Free PMC article.

10

Prediction of binding affinities between the human amphiphysin-1 SH3 domain and its peptide ligands using homology modeling, molecular dynamics and molecular field analysis.

Hou T, McLaughlin W, Lu B, Chen K, Wang W. Hou T, et al. J Proteome Res. 2006 Jan;5(1):32-43. doi: 10.1021/pr0502267. J Proteome Res. 2006. PMID: 16396493

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