Nix DA - Search Results

1

Flexible promoter architecture requirements for coactivator recruitment.

Chiang DY, Nix DA, Shultzaberger RK, Gasch AP, Eisen MB. Chiang DY, et al. Among authors: nix da. BMC Mol Biol. 2006 Apr 28;7:16. doi: 10.1186/1471-2199-7-16. BMC Mol Biol. 2006. PMID: 16646957 Free PMC article.

2

GATA: a graphic alignment tool for comparative sequence analysis.

Nix DA, Eisen MB. Nix DA, et al. BMC Bioinformatics. 2005 Jan 17;6:9. doi: 10.1186/1471-2105-6-9. BMC Bioinformatics. 2005. PMID: 15655071 Free PMC article.

3

Large-scale turnover of functional transcription factor binding sites in Drosophila.

Moses AM, Pollard DA, Nix DA, Iyer VN, Li XY, Biggin MD, Eisen MB. Moses AM, et al. Among authors: nix da. PLoS Comput Biol. 2006 Oct;2(10):e130. doi: 10.1371/journal.pcbi.0020130. Epub 2006 Aug 21. PLoS Comput Biol. 2006. PMID: 17040121 Free PMC article.

4

Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm.

Li XY, MacArthur S, Bourgon R, Nix D, Pollard DA, Iyer VN, Hechmer A, Simirenko L, Stapleton M, Luengo Hendriks CL, Chu HC, Ogawa N, Inwood W, Sementchenko V, Beaton A, Weiszmann R, Celniker SE, Knowles DW, Gingeras T, Speed TP, Eisen MB, Biggin MD. Li XY, et al. Among authors: nix d. PLoS Biol. 2008 Feb;6(2):e27. doi: 10.1371/journal.pbio.0060027. PLoS Biol. 2008. PMID: 18271625 Free PMC article.

5

Pluripotency transcription factor Oct4 mediates stepwise nucleosome demethylation and depletion.

Shakya A, Callister C, Goren A, Yosef N, Garg N, Khoddami V, Nix D, Regev A, Tantin D. Shakya A, et al. Mol Cell Biol. 2015 Mar;35(6):1014-25. doi: 10.1128/MCB.01105-14. Epub 2015 Jan 12. Mol Cell Biol. 2015. PMID: 25582194 Free PMC article.

6

Comprehensive identification of Drosophila dorsal-ventral patterning genes using a whole-genome tiling array.

Biemar F, Nix DA, Piel J, Peterson B, Ronshaugen M, Sementchenko V, Bell I, Manak JR, Levine MS. Biemar F, et al. Among authors: nix da. Proc Natl Acad Sci U S A. 2006 Aug 22;103(34):12763-8. doi: 10.1073/pnas.0604484103. Epub 2006 Aug 14. Proc Natl Acad Sci U S A. 2006. PMID: 16908844 Free PMC article.

7

Targeted disruption of the murine zyxin gene.

Hoffman LM, Nix DA, Benson B, Boot-Hanford R, Gustafsson E, Jamora C, Menzies AS, Goh KL, Jensen CC, Gertler FB, Fuchs E, Fässler R, Beckerle MC. Hoffman LM, et al. Among authors: nix da. Mol Cell Biol. 2003 Jan;23(1):70-9. doi: 10.1128/MCB.23.1.70-79.2003. Mol Cell Biol. 2003. PMID: 12482962 Free PMC article.

8

Genome-wide analysis of Polycomb targets in Drosophila melanogaster.

Schwartz YB, Kahn TG, Nix DA, Li XY, Bourgon R, Biggin M, Pirrotta V. Schwartz YB, et al. Among authors: nix da. Nat Genet. 2006 Jun;38(6):700-5. doi: 10.1038/ng1817. Epub 2006 May 28. Nat Genet. 2006. PMID: 16732288

9

Next generation tools for genomic data generation, distribution, and visualization.

Nix DA, Di Sera TL, Dalley BK, Milash BA, Cundick RM, Quinn KS, Courdy SJ. Nix DA, et al. BMC Bioinformatics. 2010 Sep 9;11:455. doi: 10.1186/1471-2105-11-455. BMC Bioinformatics. 2010. PMID: 20828407 Free PMC article.

10

Genome-wide analysis identifies changes in histone retention and epigenetic modifications at developmental and imprinted gene loci in the sperm of infertile men.

Hammoud SS, Nix DA, Hammoud AO, Gibson M, Cairns BR, Carrell DT. Hammoud SS, et al. Among authors: nix da. Hum Reprod. 2011 Sep;26(9):2558-69. doi: 10.1093/humrep/der192. Epub 2011 Jun 17. Hum Reprod. 2011. PMID: 21685136 Free PMC article.

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