Cui Q - Search Results

1

Gating mechanisms of mechanosensitive channels of large conductance, II: systematic study of conformational transitions.

Tang Y, Yoo J, Yethiraj A, Cui Q, Chen X. Tang Y, et al. Among authors: cui q. Biophys J. 2008 Jul;95(2):581-96. doi: 10.1529/biophysj.107.128496. Epub 2008 Apr 4. Biophys J. 2008. PMID: 18390625 Free PMC article.

2

A finite element framework for studying the mechanical response of macromolecules: application to the gating of the mechanosensitive channel MscL.

Tang Y, Cao G, Chen X, Yoo J, Yethiraj A, Cui Q. Tang Y, et al. Among authors: cui q. Biophys J. 2006 Aug 15;91(4):1248-63. doi: 10.1529/biophysj.106.085985. Epub 2006 May 26. Biophys J. 2006. PMID: 16731564 Free PMC article.

3

Does arginine remain protonated in the lipid membrane? Insights from microscopic pKa calculations.

Yoo J, Cui Q. Yoo J, et al. Among authors: cui q. Biophys J. 2008 Apr 15;94(8):L61-3. doi: 10.1529/biophysj.107.122945. Epub 2008 Jan 16. Biophys J. 2008. PMID: 18199662 Free PMC article.

4

Gating mechanisms of mechanosensitive channels of large conductance, I: a continuum mechanics-based hierarchical framework.

Chen X, Cui Q, Tang Y, Yoo J, Yethiraj A. Chen X, et al. Among authors: cui q. Biophys J. 2008 Jul;95(2):563-80. doi: 10.1529/biophysj.107.128488. Epub 2008 Apr 4. Biophys J. 2008. PMID: 18390626 Free PMC article.

5

Establishing effective simulation protocols for beta- and alpha/beta-peptides. II. Molecular mechanical (MM) model for a cyclic beta-residue.

Zhu X, Koenig P, Gellman SH, Yethiraj A, Cui Q. Zhu X, et al. Among authors: cui q. J Phys Chem B. 2008 May 1;112(17):5439-48. doi: 10.1021/jp077601y. Epub 2008 Apr 11. J Phys Chem B. 2008. PMID: 18402479

6

Mechanosensitive channels: insights from continuum-based simulations.

Tang Y, Yoo J, Yethiraj A, Cui Q, Chen X. Tang Y, et al. Among authors: cui q. Cell Biochem Biophys. 2008;52(1):1-18. doi: 10.1007/s12013-008-9024-5. Epub 2008 Sep 12. Cell Biochem Biophys. 2008. PMID: 18787764 Free PMC article. Review.

7

A computational framework for mechanical response of macromolecules: application to the salt concentration dependence of DNA bendability.

Ma L, Yethiraj A, Chen X, Cui Q. Ma L, et al. Among authors: cui q. Biophys J. 2009 May 6;96(9):3543-54. doi: 10.1016/j.bpj.2009.01.047. Biophys J. 2009. PMID: 19413960 Free PMC article.

8

Curvature generation and pressure profile modulation in membrane by lysolipids: insights from coarse-grained simulations.

Yoo J, Cui Q. Yoo J, et al. Among authors: cui q. Biophys J. 2009 Oct 21;97(8):2267-76. doi: 10.1016/j.bpj.2009.07.051. Biophys J. 2009. PMID: 19843459 Free PMC article.

9

Establishing effective simulation protocols for beta- and alpha/beta-peptides. III. Molecular mechanical model for acyclic beta-amino acids.

Zhu X, Koenig P, Hoffmann M, Yethiraj A, Cui Q. Zhu X, et al. Among authors: cui q. J Comput Chem. 2010 Jul 30;31(10):2063-77. doi: 10.1002/jcc.21493. J Comput Chem. 2010. PMID: 20175215

10

A new coarse-grained model for water: the importance of electrostatic interactions.

Wu Z, Cui Q, Yethiraj A. Wu Z, et al. Among authors: cui q. J Phys Chem B. 2010 Aug 19;114(32):10524-9. doi: 10.1021/jp1019763. J Phys Chem B. 2010. PMID: 20701383

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