Speed TP - Search Results

1

A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods.

Bengtsson H, Ray A, Spellman P, Speed TP. Bengtsson H, et al. Among authors: speed tp. Bioinformatics. 2009 Apr 1;25(7):861-7. doi: 10.1093/bioinformatics/btp074. Epub 2009 Feb 4. Bioinformatics. 2009. PMID: 19193730 Free PMC article.

2

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.

Bolstad BM, Irizarry RA, Astrand M, Speed TP. Bolstad BM, et al. Among authors: speed tp. Bioinformatics. 2003 Jan 22;19(2):185-93. doi: 10.1093/bioinformatics/19.2.185. Bioinformatics. 2003. PMID: 12538238

3

Identifying differentially expressed genes in cDNA microarray experiments authors.

Bengtsson H, Calder B, Mian IS, Callow M, Rubin E, Speed TP. Bengtsson H, et al. Among authors: speed tp. Sci Aging Knowledge Environ. 2001 Dec 19;2001(12):vp8. doi: 10.1126/sageke.2001.12.vp8. Sci Aging Knowledge Environ. 2001. PMID: 14602959 No abstract available.

4

A genotype calling algorithm for affymetrix SNP arrays.

Rabbee N, Speed TP. Rabbee N, et al. Among authors: speed tp. Bioinformatics. 2006 Jan 1;22(1):7-12. doi: 10.1093/bioinformatics/bti741. Epub 2005 Nov 2. Bioinformatics. 2006. PMID: 16267090

5

A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes.

Neve RM, Chin K, Fridlyand J, Yeh J, Baehner FL, Fevr T, Clark L, Bayani N, Coppe JP, Tong F, Speed T, Spellman PT, DeVries S, Lapuk A, Wang NJ, Kuo WL, Stilwell JL, Pinkel D, Albertson DG, Waldman FM, McCormick F, Dickson RB, Johnson MD, Lippman M, Ethier S, Gazdar A, Gray JW. Neve RM, et al. Cancer Cell. 2006 Dec;10(6):515-27. doi: 10.1016/j.ccr.2006.10.008. Cancer Cell. 2006. PMID: 17157791 Free PMC article.

6

Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data.

Carvalho B, Bengtsson H, Speed TP, Irizarry RA. Carvalho B, et al. Among authors: speed tp. Biostatistics. 2007 Apr;8(2):485-99. doi: 10.1093/biostatistics/kxl042. Epub 2006 Dec 22. Biostatistics. 2007. PMID: 17189563

7

Estimation and assessment of raw copy numbers at the single locus level.

Bengtsson H, Irizarry R, Carvalho B, Speed TP. Bengtsson H, et al. Among authors: speed tp. Bioinformatics. 2008 Mar 15;24(6):759-67. doi: 10.1093/bioinformatics/btn016. Epub 2008 Jan 19. Bioinformatics. 2008. PMID: 18204055

8

FIRMA: a method for detection of alternative splicing from exon array data.

Purdom E, Simpson KM, Robinson MD, Conboy JG, Lapuk AV, Speed TP. Purdom E, et al. Among authors: speed tp. Bioinformatics. 2008 Aug 1;24(15):1707-14. doi: 10.1093/bioinformatics/btn284. Epub 2008 Jun 23. Bioinformatics. 2008. PMID: 18573797 Free PMC article.

9

Comprehensive genomic characterization defines human glioblastoma genes and core pathways.

Cancer Genome Atlas Research Network. Cancer Genome Atlas Research Network. Nature. 2008 Oct 23;455(7216):1061-8. doi: 10.1038/nature07385. Epub 2008 Sep 4. Nature. 2008. PMID: 18772890 Free PMC article.

10

Sparse combinatorial inference with an application in cancer biology.

Mukherjee S, Pelech S, Neve RM, Kuo WL, Ziyad S, Spellman PT, Gray JW, Speed TP. Mukherjee S, et al. Among authors: speed tp. Bioinformatics. 2009 Jan 15;25(2):265-71. doi: 10.1093/bioinformatics/btn611. Epub 2008 Nov 27. Bioinformatics. 2009. PMID: 19038985 Free PMC article.

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