Gordân R - Search Results

1

Finding regulatory DNA motifs using alignment-free evolutionary conservation information.

Gordân R, Narlikar L, Hartemink AJ. Gordân R, et al. Nucleic Acids Res. 2010 Apr;38(6):e90. doi: 10.1093/nar/gkp1166. Epub 2010 Jan 4. Nucleic Acids Res. 2010. PMID: 20047961 Free PMC article.

2

TFAM as a sensor of UVC-induced mitochondrial DNA damage.

King DE, Beard EE, Satusky MJ, Ryde IT, George A, Johnson C, Dolan EL, Zhang Y, Zhu W, Wilkins H, Corden E, Murphy SK, Erie D, Gordan R, Meyer JN. King DE, et al. Among authors: gordan r. bioRxiv [Preprint]. 2024 Nov 1:2024.10.24.620005. doi: 10.1101/2024.10.24.620005. bioRxiv. 2024. PMID: 39484377 Free PMC article. Preprint.

3

Divergence in a Eukaryotic Transcription Factor's co-TF Dependence Involves Multiple Intrinsically Disordered Regions Affecting Activation and Autoinhibition.

Snyder LF, O'Brien EM, Zhao J, Liang J, Bruce BJ, Zhang Y, Zhu W, Cassier TJ, Schnicker NJ, Zhou X, Gordân R, He BZ. Snyder LF, et al. Among authors: gordan r. bioRxiv [Preprint]. 2025 Jan 2:2024.04.20.590343. doi: 10.1101/2024.04.20.590343. bioRxiv. 2025. Update in: Nat Commun. 2025 Jun 18;16(1):5340. doi: 10.1038/s41467-025-59244-w. PMID: 39253425 Free PMC article. Updated. Preprint.

4

Informative priors based on transcription factor structural class improve de novo motif discovery.

Narlikar L, Gordân R, Ohler U, Hartemink AJ. Narlikar L, et al. Among authors: gordan r. Bioinformatics. 2006 Jul 15;22(14):e384-92. doi: 10.1093/bioinformatics/btl251. Bioinformatics. 2006. PMID: 16873497

5

A nucleosome-guided map of transcription factor binding sites in yeast.

Narlikar L, Gordân R, Hartemink AJ. Narlikar L, et al. Among authors: gordan r. PLoS Comput Biol. 2007 Nov;3(11):e215. doi: 10.1371/journal.pcbi.0030215. Epub 2007 Sep 24. PLoS Comput Biol. 2007. PMID: 17997593 Free PMC article.

6

Using DNA duplex stability information for transcription factor binding site discovery.

Gordân R, Hartemink AJ. Gordân R, et al. Pac Symp Biocomput. 2008:453-64. Pac Symp Biocomput. 2008. PMID: 18229707 Free article.

7

Distinguishing direct versus indirect transcription factor-DNA interactions.

Gordân R, Hartemink AJ, Bulyk ML. Gordân R, et al. Genome Res. 2009 Nov;19(11):2090-100. doi: 10.1101/gr.094144.109. Epub 2009 Aug 3. Genome Res. 2009. PMID: 19652015 Free PMC article.

8

Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading.

MacAlpine HK, Gordân R, Powell SK, Hartemink AJ, MacAlpine DM. MacAlpine HK, et al. Among authors: gordan r. Genome Res. 2010 Feb;20(2):201-11. doi: 10.1101/gr.097873.109. Epub 2009 Dec 7. Genome Res. 2010. PMID: 19996087 Free PMC article.

9

Identification of Tat-SF1 cellular targets by exon array analysis reveals dual roles in transcription and splicing.

Miller HB, Robinson TJ, Gordân R, Hartemink AJ, Garcia-Blanco MA. Miller HB, et al. Among authors: gordan r. RNA. 2011 Apr;17(4):665-74. doi: 10.1261/rna.2462011. Epub 2011 Jan 31. RNA. 2011. PMID: 21282347 Free PMC article.

10

Stability selection for regression-based models of transcription factor-DNA binding specificity.

Mordelet F, Horton J, Hartemink AJ, Engelhardt BE, Gordân R. Mordelet F, et al. Among authors: gordan r. Bioinformatics. 2013 Jul 1;29(13):i117-25. doi: 10.1093/bioinformatics/btt221. Bioinformatics. 2013. PMID: 23812975 Free PMC article.

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