Martin JS - Search Results

1

Disease-associated mutations that alter the RNA structural ensemble.

Halvorsen M, Martin JS, Broadaway S, Laederach A. Halvorsen M, et al. Among authors: martin js. PLoS Genet. 2010 Aug 19;6(8):e1001074. doi: 10.1371/journal.pgen.1001074. PLoS Genet. 2010. PMID: 20808897 Free PMC article.

2

Evaluation of the information content of RNA structure mapping data for secondary structure prediction.

Quarrier S, Martin JS, Davis-Neulander L, Beauregard A, Laederach A. Quarrier S, et al. Among authors: martin js. RNA. 2010 Jun;16(6):1108-17. doi: 10.1261/rna.1988510. Epub 2010 Apr 22. RNA. 2010. PMID: 20413617 Free PMC article.

3

Rapid quantification and analysis of kinetic •OH radical footprinting data using SAFA.

Simmons K, Martin JS, Shcherbakova I, Laederach A. Simmons K, et al. Among authors: martin js. Methods Enzymol. 2009;468:47-66. doi: 10.1016/S0076-6879(09)68003-4. Epub 2009 Nov 17. Methods Enzymol. 2009. PMID: 20946764 Free PMC article.

4

Structural effects of linkage disequilibrium on the transcriptome.

Martin JS, Halvorsen M, Davis-Neulander L, Ritz J, Gopinath C, Beauregard A, Laederach A. Martin JS, et al. RNA. 2012 Jan;18(1):77-87. doi: 10.1261/rna.029900.111. Epub 2011 Nov 22. RNA. 2012. PMID: 22109839 Free PMC article.

5

Evaluating our ability to predict the structural disruption of RNA by SNPs.

Ritz J, Martin JS, Laederach A. Ritz J, et al. Among authors: martin js. BMC Genomics. 2012 Jun 18;13 Suppl 4(Suppl 4):S6. doi: 10.1186/1471-2164-13-S4-S6. BMC Genomics. 2012. PMID: 22759654 Free PMC article.

6

Evolutionary evidence for alternative structure in RNA sequence co-variation.

Ritz J, Martin JS, Laederach A. Ritz J, et al. Among authors: martin js. PLoS Comput Biol. 2013;9(7):e1003152. doi: 10.1371/journal.pcbi.1003152. Epub 2013 Jul 25. PLoS Comput Biol. 2013. PMID: 23935473 Free PMC article.

7

Exhaustive Enumeration of Kinetic Model Topologies for the Analysis of Time-Resolved RNA Folding.

Martin JS, Simmons K, Laederach A. Martin JS, et al. Algorithms. 2009 Mar 1;2(1):200-214. doi: 10.3390/a2010200. Algorithms. 2009. PMID: 19865589 Free PMC article.

8

Mapping the kinetic barriers of a Large RNA molecule's folding landscape.

Schlatterer JC, Martin JS, Laederach A, Brenowitz M. Schlatterer JC, et al. Among authors: martin js. PLoS One. 2014 Feb 25;9(2):e85041. doi: 10.1371/journal.pone.0085041. eCollection 2014. PLoS One. 2014. PMID: 24586236 Free PMC article.

9

Understanding the role of three-dimensional topology in determining the folding intermediates of group I introns.

Chen C, Mitra S, Jonikas M, Martin J, Brenowitz M, Laederach A. Chen C, et al. Biophys J. 2013 Mar 19;104(6):1326-37. doi: 10.1016/j.bpj.2013.02.007. Epub 2013 Mar 19. Biophys J. 2013. PMID: 23528092 Free PMC article.

10

Single Molecule Cluster Analysis dissects splicing pathway conformational dynamics.

Blanco MR, Martin JS, Kahlscheuer ML, Krishnan R, Abelson J, Laederach A, Walter NG. Blanco MR, et al. Among authors: martin js. Nat Methods. 2015 Nov;12(11):1077-84. doi: 10.1038/nmeth.3602. Epub 2015 Sep 28. Nat Methods. 2015. PMID: 26414013 Free PMC article.

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