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Searching for non-B DNA-forming motifs using nBMST (non-B DNA motif search tool).
Cer RZ, Bruce KH, Donohue DE, Temiz NA, Mudunuri US, Yi M, Volfovsky N, Bacolla A, Luke BT, Collins JR, Stephens RM. Cer RZ, et al. Among authors: donohue de. Curr Protoc Hum Genet. 2012 Apr;Chapter 18:Unit 18.7.1-22. doi: 10.1002/0471142905.hg1807s73. Curr Protoc Hum Genet. 2012. PMID: 22470144 Free PMC article.
Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools.
Cer RZ, Donohue DE, Mudunuri US, Temiz NA, Loss MA, Starner NJ, Halusa GN, Volfovsky N, Yi M, Luke BT, Bacolla A, Collins JR, Stephens RM. Cer RZ, et al. Among authors: donohue de. Nucleic Acids Res. 2013 Jan;41(Database issue):D94-D100. doi: 10.1093/nar/gks955. Epub 2012 Nov 3. Nucleic Acids Res. 2013. PMID: 23125372 Free PMC article.
Guanine holes are prominent targets for mutation in cancer and inherited disease.
Bacolla A, Temiz NA, Yi M, Ivanic J, Cer RZ, Donohue DE, Ball EV, Mudunuri US, Wang G, Jain A, Volfovsky N, Luke BT, Stephens RM, Cooper DN, Collins JR, Vasquez KM. Bacolla A, et al. Among authors: donohue de. PLoS Genet. 2013;9(9):e1003816. doi: 10.1371/journal.pgen.1003816. Epub 2013 Sep 26. PLoS Genet. 2013. PMID: 24086153 Free PMC article.
The somatic autosomal mutation matrix in cancer genomes.
Temiz NA, Donohue DE, Bacolla A, Vasquez KM, Cooper DN, Mudunuri U, Ivanic J, Cer RZ, Yi M, Stephens RM, Collins JR, Luke BT. Temiz NA, et al. Among authors: donohue de. Hum Genet. 2015 Aug;134(8):851-64. doi: 10.1007/s00439-015-1566-1. Epub 2015 May 23. Hum Genet. 2015. PMID: 26001532 Free PMC article.
Erratum to: The somatic autosomal mutation matrix in cancer genomes.
Temiz NA, Donohue DE, Bacolla A, Vasquez KM, Cooper DN, Mudunuri U, Ivanic J, Cer RZ, Yi M, Stephens RM, Collins JR, Luke BT. Temiz NA, et al. Among authors: donohue de. Hum Genet. 2015 Aug;134(8):865-7. doi: 10.1007/s00439-015-1576-z. Hum Genet. 2015. PMID: 26071096 Free PMC article. No abstract available.
APOBEC3B is an enzymatic source of mutation in breast cancer.
Burns MB, Lackey L, Carpenter MA, Rathore A, Land AM, Leonard B, Refsland EW, Kotandeniya D, Tretyakova N, Nikas JB, Yee D, Temiz NA, Donohue DE, McDougle RM, Brown WL, Law EK, Harris RS. Burns MB, et al. Among authors: donohue de. Nature. 2013 Feb 21;494(7437):366-70. doi: 10.1038/nature11881. Epub 2013 Feb 6. Nature. 2013. PMID: 23389445 Free PMC article.
Metabolomic analysis of male combat veterans with post traumatic stress disorder.
Mellon SH, Bersani FS, Lindqvist D, Hammamieh R, Donohue D, Dean K, Jett M, Yehuda R, Flory J, Reus VI, Bierer LM, Makotkine I, Abu Amara D, Henn Haase C, Coy M, Doyle FJ 3rd, Marmar C, Wolkowitz OM. Mellon SH, et al. PLoS One. 2019 Mar 18;14(3):e0213839. doi: 10.1371/journal.pone.0213839. eCollection 2019. PLoS One. 2019. PMID: 30883584 Free PMC article.
Multi-omic biomarker identification and validation for diagnosing warzone-related post-traumatic stress disorder.
Dean KR, Hammamieh R, Mellon SH, Abu-Amara D, Flory JD, Guffanti G, Wang K, Daigle BJ Jr, Gautam A, Lee I, Yang R, Almli LM, Bersani FS, Chakraborty N, Donohue D, Kerley K, Kim TK, Laska E, Young Lee M, Lindqvist D, Lori A, Lu L, Misganaw B, Muhie S, Newman J, Price ND, Qin S, Reus VI, Siegel C, Somvanshi PR, Thakur GS, Zhou Y; PTSD Systems Biology Consortium; Hood L, Ressler KJ, Wolkowitz OM, Yehuda R, Jett M, Doyle FJ 3rd, Marmar C. Dean KR, et al. Mol Psychiatry. 2020 Dec;25(12):3337-3349. doi: 10.1038/s41380-019-0496-z. Epub 2019 Sep 10. Mol Psychiatry. 2020. PMID: 31501510 Free PMC article.
35 results