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Page 1
A large-scale evaluation of computational protein function prediction.
Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Pandey G, Yunes JM, Talwalkar AS, Repo S, Souza ML, Piovesan D, Casadio R, Wang Z, Cheng J, Fang H, Gough J, Koskinen P, Törönen P, Nokso-Koivisto J, Holm L, Cozzetto D, Buchan DW, Bryson K, Jones DT, Limaye B, Inamdar H, Datta A, Manjari SK, Joshi R, Chitale M, Kihara D, Lisewski AM, Erdin S, Venner E, Lichtarge O, Rentzsch R, Yang H, Romero AE, Bhat P, Paccanaro A, Hamp T, Kaßner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, Heron M, Hönigschmid P, Hopf TA, Kaufmann S, Kiening M, Krompass D, Landerer C, Mahlich Y, Roos M, Björne J, Salakoski T, Wong A, Shatkay H, Gatzmann F, Sommer I, Wass MN, Sternberg MJ, Škunca N, Supek F, Bošnjak M, Panov P, Džeroski S, Šmuc T, Kourmpetis YA, van Dijk AD, ter Braak CJ, Zhou Y, Gong Q, Dong X, Tian W, Falda M, Fontana P, Lavezzo E, Di Camillo B, Toppo S, Lan L, Djuric N, Guo Y, Vucetic S, Bairoch A, Linial M, Babbitt PC, Brenner SE, Orengo C, Rost B, Mooney SD, Friedberg I. Radivojac P, et al. Among authors: landerer c. Nat Methods. 2013 Mar;10(3):221-7. doi: 10.1038/nmeth.2340. Epub 2013 Jan 27. Nat Methods. 2013. PMID: 23353650 Free PMC article.
Homology-based inference sets the bar high for protein function prediction.
Hamp T, Kassner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, Heron M, Hönigschmid P, Hopf TA, Kaufmann S, Kiening M, Krompass D, Landerer C, Mahlich Y, Roos M, Rost B. Hamp T, et al. Among authors: landerer c. BMC Bioinformatics. 2013;14 Suppl 3(Suppl 3):S7. doi: 10.1186/1471-2105-14-S3-S7. Epub 2013 Feb 28. BMC Bioinformatics. 2013. PMID: 23514582 Free PMC article.
CD-CODE: crowdsourcing condensate database and encyclopedia.
Rostam N, Ghosh S, Chow CFW, Hadarovich A, Landerer C, Ghosh R, Moon H, Hersemann L, Mitrea DM, Klein IA, Hyman AA, Toth-Petroczy A. Rostam N, et al. Among authors: landerer c. Nat Methods. 2023 May;20(5):673-676. doi: 10.1038/s41592-023-01831-0. Epub 2023 Apr 6. Nat Methods. 2023. PMID: 37024650 Free PMC article.
Mouse liver assembloids model periportal architecture and biliary fibrosis.
Dowbaj AM, Sljukic A, Niksic A, Landerer C, Delpierre J, Yang H, Lahree A, Kühn AC, Beers D, Byrne HM, Seifert S, Harrington HA, Zerial M, Huch M. Dowbaj AM, et al. Among authors: landerer c. Nature. 2025 May 29. doi: 10.1038/s41586-025-09183-9. Online ahead of print. Nature. 2025. PMID: 40441268
18 results