Taubert J - Search Results

1

Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.

Petryszak R, Burdett T, Fiorelli B, Fonseca NA, Gonzalez-Porta M, Hastings E, Huber W, Jupp S, Keays M, Kryvych N, McMurry J, Marioni JC, Malone J, Megy K, Rustici G, Tang AY, Taubert J, Williams E, Mannion O, Parkinson HE, Brazma A. Petryszak R, et al. Among authors: taubert j. Nucleic Acids Res. 2014 Jan;42(Database issue):D926-32. doi: 10.1093/nar/gkt1270. Epub 2013 Dec 4. Nucleic Acids Res. 2014. PMID: 24304889 Free PMC article.

2

Graph-based analysis and visualization of experimental results with ONDEX.

Köhler J, Baumbach J, Taubert J, Specht M, Skusa A, Rüegg A, Rawlings C, Verrier P, Philippi S. Köhler J, et al. Among authors: taubert j. Bioinformatics. 2006 Jun 1;22(11):1383-90. doi: 10.1093/bioinformatics/btl081. Epub 2006 Mar 13. Bioinformatics. 2006. PMID: 16533819

3

Wheat Estimated Transcript Server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequence.

Mitchell RA, Castells-Brooke N, Taubert J, Verrier PJ, Leader DJ, Rawlings CJ. Mitchell RA, et al. Among authors: taubert j. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W148-51. doi: 10.1093/nar/gkm220. Epub 2007 Apr 16. Nucleic Acids Res. 2007. PMID: 17439966 Free PMC article.

4

Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis.

Lysenko A, Defoin-Platel M, Hassani-Pak K, Taubert J, Hodgman C, Rawlings CJ, Saqi M. Lysenko A, et al. Among authors: taubert j. BMC Bioinformatics. 2011 May 25;12:203. doi: 10.1186/1471-2105-12-203. BMC Bioinformatics. 2011. PMID: 21612636 Free PMC article.

5

WIBL: Workbench for Integrative Biological Learning.

Lesk V, Taubert J, Rawlings C, Dunbar S, Muggleton S. Lesk V, et al. Among authors: taubert j. J Integr Bioinform. 2011 Jun 27;8(2):156. doi: 10.2390/biecoll-jib-2011-156. J Integr Bioinform. 2011. PMID: 21705808 Free article.

6

Graph-based sequence annotation using a data integration approach.

Pesch R, Lysenko A, Hindle M, Hassani-Pak K, Thiele R, Rawlings C, Köhler J, Taubert J. Pesch R, et al. Among authors: taubert j. J Integr Bioinform. 2008 Aug 25;5(2). doi: 10.2390/biecoll-jib-2008-94. J Integr Bioinform. 2008. PMID: 20134069

7

Ondex Web: web-based visualization and exploration of heterogeneous biological networks.

Taubert J, Hassani-Pak K, Castells-Brooke N, Rawlings CJ. Taubert J, et al. Bioinformatics. 2014 Apr 1;30(7):1034-5. doi: 10.1093/bioinformatics/btt740. Epub 2013 Dec 20. Bioinformatics. 2014. PMID: 24363379 Free PMC article.

8

How little do we actually know? On the size of gene regulatory networks.

Röttger R, Rückert U, Taubert J, Baumbach J. Röttger R, et al. Among authors: taubert j. IEEE/ACM Trans Comput Biol Bioinform. 2012 Sep-Oct;9(5):1293-300. doi: 10.1109/TCBB.2012.71. IEEE/ACM Trans Comput Biol Bioinform. 2012. PMID: 22585140

9

Developing integrated crop knowledge networks to advance candidate gene discovery.

Hassani-Pak K, Castellote M, Esch M, Hindle M, Lysenko A, Taubert J, Rawlings C. Hassani-Pak K, et al. Among authors: taubert j. Appl Transl Genom. 2016 Nov 2;11:18-26. doi: 10.1016/j.atg.2016.10.003. eCollection 2016 Dec. Appl Transl Genom. 2016. PMID: 28018846 Free PMC article.

10

Data integration for plant genomics--exemplars from the integration of Arabidopsis thaliana databases.

Lysenko A, Hindle MM, Taubert J, Saqi M, Rawlings CJ. Lysenko A, et al. Among authors: taubert j. Brief Bioinform. 2009 Nov;10(6):676-93. doi: 10.1093/bib/bbp047. Brief Bioinform. 2009. PMID: 19933213

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