Shetty AC - Search Results

1

Bioinformatic analysis of bacteria and host cell dual RNA-sequencing experiments.

Marsh JW, Hayward RJ, Shetty AC, Mahurkar A, Humphrys MS, Myers GSA. Marsh JW, et al. Among authors: shetty ac. Brief Bioinform. 2018 Nov 27;19(6):1115-1129. doi: 10.1093/bib/bbx043. Brief Bioinform. 2018. PMID: 28535295 Free PMC article.

2

Simultaneous transcriptional profiling of bacteria and their host cells.

Humphrys MS, Creasy T, Sun Y, Shetty AC, Chibucos MC, Drabek EF, Fraser CM, Farooq U, Sengamalay N, Ott S, Shou H, Bavoil PM, Mahurkar A, Myers GS. Humphrys MS, et al. Among authors: shetty ac. PLoS One. 2013 Dec 4;8(12):e80597. doi: 10.1371/journal.pone.0080597. eCollection 2013. PLoS One. 2013. PMID: 24324615 Free PMC article.

3

MNKs act as a regulatory switch for eIF4E1 and eIF4E3 driven mRNA translation in DLBCL.

Landon AL, Muniandy PA, Shetty AC, Lehrmann E, Volpon L, Houng S, Zhang Y, Dai B, Peroutka R, Mazan-Mamczarz K, Steinhardt J, Mahurkar A, Becker KG, Borden KL, Gartenhaus RB. Landon AL, et al. Among authors: shetty ac. Nat Commun. 2014 Nov 18;5:5413. doi: 10.1038/ncomms6413. Nat Commun. 2014. PMID: 25403230 Free PMC article.

4

Map of open and closed chromatin domains in Drosophila genome.

Milon B, Sun Y, Chang W, Creasy T, Mahurkar A, Shetty A, Nurminsky D, Nurminskaya M. Milon B, et al. BMC Genomics. 2014 Nov 18;15(1):988. doi: 10.1186/1471-2164-15-988. BMC Genomics. 2014. PMID: 25407537 Free PMC article.

5

Brain feminization requires active repression of masculinization via DNA methylation.

Nugent BM, Wright CL, Shetty AC, Hodes GE, Lenz KM, Mahurkar A, Russo SJ, Devine SE, McCarthy MM. Nugent BM, et al. Among authors: shetty ac. Nat Neurosci. 2015 May;18(5):690-7. doi: 10.1038/nn.3988. Epub 2015 Mar 30. Nat Neurosci. 2015. PMID: 25821913 Free PMC article.

6

New signaling pathways govern the host response to C. albicans infection in various niches.

Liu Y, Shetty AC, Schwartz JA, Bradford LL, Xu W, Phan QT, Kumari P, Mahurkar A, Mitchell AP, Ravel J, Fraser CM, Filler SG, Bruno VM. Liu Y, et al. Among authors: shetty ac. Genome Res. 2015 May;25(5):679-89. doi: 10.1101/gr.187427.114. Epub 2015 Apr 9. Genome Res. 2015. PMID: 25858952 Free PMC article.

7

RNA-Seq analysis of isolate- and growth phase-specific differences in the global transcriptomes of enteropathogenic Escherichia coli prototype isolates.

Hazen TH, Daugherty SC, Shetty A, Mahurkar AA, White O, Kaper JB, Rasko DA. Hazen TH, et al. Front Microbiol. 2015 Jun 12;6:569. doi: 10.3389/fmicb.2015.00569. eCollection 2015. Front Microbiol. 2015. PMID: 26124752 Free PMC article.

8

Unique gene program of rat small resistance mesenteric arteries as revealed by deep RNA sequencing.

Reho JJ, Shetty A, Dippold RP, Mahurkar A, Fisher SA. Reho JJ, et al. Physiol Rep. 2015 Jul;3(7):e12450. doi: 10.14814/phy2.12450. Physiol Rep. 2015. PMID: 26156969 Free PMC article.

9

Identification of a gene expression signature associated with the metastasis suppressor function of NME1: prognostic value in human melanoma.

Leonard MK, McCorkle JR, Snyder DE, Novak M, Zhang Q, Shetty AC, Mahurkar AA, Kaetzel DM. Leonard MK, et al. Among authors: shetty ac. Lab Invest. 2018 Mar;98(3):327-338. doi: 10.1038/labinvest.2017.108. Epub 2017 Oct 23. Lab Invest. 2018. PMID: 29058705 Free PMC article.

10

Aligner optimization increases accuracy and decreases compute times in multi-species sequence data.

Robinson KM, Hawkins AS, Santana-Cruz I, Adkins RS, Shetty AC, Nagaraj S, Sadzewicz L, Tallon LJ, Rasko DA, Fraser CM, Mahurkar A, Silva JC, Dunning Hotopp JC. Robinson KM, et al. Among authors: shetty ac. Microb Genom. 2017 Jul 8;3(9):e000122. doi: 10.1099/mgen.0.000122. eCollection 2017 Sep. Microb Genom. 2017. PMID: 29114401 Free PMC article.

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