Nechaev S - Search Results

1

Genome-wide RNA pol II initiation and pausing in neural progenitors of the rat.

Scheidegger A, Dunn CJ, Samarakkody A, Koney NK, Perley D, Saha RN, Nechaev S. Scheidegger A, et al. Among authors: nechaev s. BMC Genomics. 2019 Jun 11;20(1):477. doi: 10.1186/s12864-019-5829-4. BMC Genomics. 2019. PMID: 31185909 Free PMC article.

2

Topological relaxation of entangled flux lattices: single versus collective line dynamics.

Bikbov R, Nechaev S. Bikbov R, et al. Among authors: nechaev s. Phys Rev Lett. 2001 Oct 8;87(15):150602. doi: 10.1103/PhysRevLett.87.150602. Phys Rev Lett. 2001. PMID: 11686128

3

[The role of topological limitations in the kinetics of homopolymer collapse and self-assembly of biopolymers].

Grosberg AIu, Nechaev SK, Shakhnovich EI. Grosberg AIu, et al. Among authors: nechaev sk. Biofizika. 1988 Mar-Apr;33(2):247-53. Biofizika. 1988. PMID: 3390477 Russian.

4

Exact solution of the 2D wetting problem in a periodic potential.

Nechaev S, Zhang YC. Nechaev S, et al. Phys Rev Lett. 1995 Mar 6;74(10):1815-1818. doi: 10.1103/PhysRevLett.74.1815. Phys Rev Lett. 1995. PMID: 10057764 No abstract available.

5

RNA polymerase II pausing can be retained or acquired during activation of genes involved in the epithelial to mesenchymal transition.

Samarakkody A, Abbas A, Scheidegger A, Warns J, Nnoli O, Jokinen B, Zarns K, Kubat B, Dhasarathy A, Nechaev S. Samarakkody A, et al. Among authors: nechaev s. Nucleic Acids Res. 2015 Apr 30;43(8):3938-49. doi: 10.1093/nar/gkv263. Epub 2015 Mar 27. Nucleic Acids Res. 2015. PMID: 25820424 Free PMC article.

6

Analysis of paired end Pol II ChIP-seq and short capped RNA-seq in MCF-7 cells.

Scheidegger A, Burkholder A, Abbas A, Zarns K, Samarakkody A, Nechaev S. Scheidegger A, et al. Among authors: nechaev s. Genom Data. 2015 Sep 1;5:263-267. doi: 10.1016/j.gdata.2015.06.021. Genom Data. 2015. PMID: 26229744 Free PMC article.

We performed genome-wide analysis of short capped RNAs (scRNAs) and Pol II chromatin immunoprecipitation sequencing (ChIP-seq) in human breast cancer MCF-7 cells to better understand Pol II pausing (Samarakkody, A., Abbas, A., Scheidegger, A., Warns, J., Nnoli, O., Jokinen, B., Z …

We performed genome-wide analysis of short capped RNAs (scRNAs) and Pol II chromatin immunoprecipitation sequencing (ChIP-seq) in human brea …

7

RNA polymerase II pausing as a context-dependent reader of the genome.

Scheidegger A, Nechaev S. Scheidegger A, et al. Among authors: nechaev s. Biochem Cell Biol. 2016 Feb;94(1):82-92. doi: 10.1139/bcb-2015-0045. Epub 2015 Sep 15. Biochem Cell Biol. 2016. PMID: 26555214 Free PMC article. Review.

8

MicroRNA and mRNA Transcriptome Profiling in Primary Human Astrocytes Infected with Borrelia burgdorferi.

Casselli T, Qureshi H, Peterson E, Perley D, Blake E, Jokinen B, Abbas A, Nechaev S, Watt JA, Dhasarathy A, Brissette CA. Casselli T, et al. Among authors: nechaev s. PLoS One. 2017 Jan 30;12(1):e0170961. doi: 10.1371/journal.pone.0170961. eCollection 2017. PLoS One. 2017. PMID: 28135303 Free PMC article.

9

The Histone Deacetylase SIRT6 Restrains Transcription Elongation via Promoter-Proximal Pausing.

Etchegaray JP, Zhong L, Li C, Henriques T, Ablondi E, Nakadai T, Van Rechem C, Ferrer C, Ross KN, Choi JE, Samarakkody A, Ji F, Chang A, Sadreyev RI, Ramaswamy S, Nechaev S, Whetstine JR, Roeder RG, Adelman K, Goren A, Mostoslavsky R. Etchegaray JP, et al. Among authors: nechaev s. Mol Cell. 2019 Aug 22;75(4):683-699.e7. doi: 10.1016/j.molcel.2019.06.034. Epub 2019 Aug 6. Mol Cell. 2019. PMID: 31399344 Free PMC article.

10

Transcriptional responses of cancer cells to heat shock-inducing stimuli involve amplification of robust HSF1 binding.

Dastidar SG, De Kumar B, Lauckner B, Parrello D, Perley D, Vlasenok M, Tyagi A, Koney NK, Abbas A, Nechaev S. Dastidar SG, et al. Among authors: nechaev s. Nat Commun. 2023 Nov 16;14(1):7420. doi: 10.1038/s41467-023-43157-7. Nat Commun. 2023. PMID: 37973875 Free PMC article.

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