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BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons.
Djemiel C, Dequiedt S, Karimi B, Cottin A, Girier T, El Djoudi Y, Wincker P, Lelièvre M, Mondy S, Chemidlin Prévost-Bouré N, Maron PA, Ranjard L, Terrat S. Djemiel C, et al. Among authors: cottin a. BMC Bioinformatics. 2020 Oct 31;21(1):492. doi: 10.1186/s12859-020-03829-3. BMC Bioinformatics. 2020. PMID: 33129268 Free PMC article.
Inferring microbiota functions from taxonomic genes: a review.
Djemiel C, Maron PA, Terrat S, Dequiedt S, Cottin A, Ranjard L. Djemiel C, et al. Among authors: cottin a. Gigascience. 2022 Jan 12;11(1):giab090. doi: 10.1093/gigascience/giab090. Gigascience. 2022. PMID: 35022702 Free PMC article. Review.
Potential of Meta-Omics to Provide Modern Microbial Indicators for Monitoring Soil Quality and Securing Food Production.
Djemiel C, Dequiedt S, Karimi B, Cottin A, Horrigue W, Bailly A, Boutaleb A, Sadet-Bourgeteau S, Maron PA, Chemidlin Prévost-Bouré N, Ranjard L, Terrat S. Djemiel C, et al. Among authors: cottin a. Front Microbiol. 2022 Jun 30;13:889788. doi: 10.3389/fmicb.2022.889788. eCollection 2022. Front Microbiol. 2022. PMID: 35847063 Free PMC article. Review.
Galaxy Is a Suitable Bioinformatics Platform for the Molecular Diagnosis of Human Genetic Disorders Using High-Throughput Sequencing Data Analysis: Five Years of Experience in a Clinical Laboratory.
Chappell K, Francou B, Habib C, Huby T, Leoni M, Cottin A, Nadal F, Adnet E, Paoli E, Oliveira C, Verstuyft C, Davit-Spraul A, Gaignard P, Lebigot E, Duclos-Vallee JC, Young J, Kamenicky P, Adams D, Echaniz-Laguna A, Gonzales E, Bouvattier C, Linglart A, Picard V, Bergoin E, Jacquemin E, Guiochon-Mantel A, Proust A, Bouligand J. Chappell K, et al. Among authors: cottin a. Clin Chem. 2022 Feb 1;68(2):313-321. doi: 10.1093/clinchem/hvab220. Clin Chem. 2022. PMID: 34871369
16 results