Swaney DL - Search Results

1

Meningioma DNA methylation groups identify biological drivers and therapeutic vulnerabilities.

Choudhury A, Magill ST, Eaton CD, Prager BC, Chen WC, Cady MA, Seo K, Lucas CG, Casey-Clyde TJ, Vasudevan HN, Liu SJ, Villanueva-Meyer JE, Lam TC, Pu JK, Li LF, Leung GK, Swaney DL, Zhang MY, Chan JW, Qiu Z, Martin MV, Susko MS, Braunstein SE, Bush NAO, Schulte JD, Butowski N, Sneed PK, Berger MS, Krogan NJ, Perry A, Phillips JJ, Solomon DA, Costello JF, McDermott MW, Rich JN, Raleigh DR. Choudhury A, et al. Among authors: swaney dl. Nat Genet. 2022 May;54(5):649-659. doi: 10.1038/s41588-022-01061-8. Epub 2022 May 9. Nat Genet. 2022. PMID: 35534562 Free PMC article.

2

Deep learning from harmonized peptide libraries enables retention time prediction of diverse post translational modifications.

Wilburn DB, Shannon AE, Spicer V, Richards AL, Yeung D, Swaney DL, Krokhin OV, Searle BC. Wilburn DB, et al. Among authors: swaney dl. bioRxiv [Preprint]. 2023 Jun 2:2023.05.30.542978. doi: 10.1101/2023.05.30.542978. bioRxiv. 2023. PMID: 37398395 Free PMC article. Preprint.

3

Multi-scale photocatalytic proximity labeling reveals cell surface neighbors on and between cells.

Lin Z, Schaefer K, Lui I, Yao Z, Fossati A, Swaney DL, Palar A, Sali A, Wells JA. Lin Z, et al. Among authors: swaney dl. bioRxiv [Preprint]. 2023 Oct 29:2023.10.28.564055. doi: 10.1101/2023.10.28.564055. bioRxiv. 2023. Update in: Science. 2024 Jul 19;385(6706):eadl5763. doi: 10.1126/science.adl5763. PMID: 37961561 Free PMC article. Updated. Preprint.

4

Plasma proteomics for novel biomarker discovery in childhood tuberculosis.

Fossati A, Wambi P, Jaganath D, Calderon R, Castro R, Mohapatra A, McKetney J, Luiz J, Nerurkar R, Nkereuwem E, Franke MF, Mousavian Z, Collins JM, Sigal GB, Segal MR, Kampman B, Wobudeya E, Cattamanchi A, Ernst JD, Zar HJ, Swaney DL. Fossati A, et al. Among authors: swaney dl. medRxiv [Preprint]. 2025 Mar 20:2024.12.05.24318340. doi: 10.1101/2024.12.05.24318340. medRxiv. 2025. PMID: 39677468 Free PMC article. Preprint.

5

Systematic functional prioritization of protein posttranslational modifications.

Beltrao P, Albanèse V, Kenner LR, Swaney DL, Burlingame A, Villén J, Lim WA, Fraser JS, Frydman J, Krogan NJ. Beltrao P, et al. Among authors: swaney dl. Cell. 2012 Jul 20;150(2):413-25. doi: 10.1016/j.cell.2012.05.036. Cell. 2012. PMID: 22817900 Free PMC article.

6

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.

Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, Villén J. Swaney DL, et al. Nat Methods. 2013 Jul;10(7):676-82. doi: 10.1038/nmeth.2519. Epub 2013 Jun 9. Nat Methods. 2013. PMID: 23749301 Free PMC article.

7

Proteome Imbalance of Mitochondrial Electron Transport Chain in Brown Adipocytes Leads to Metabolic Benefits.

Masand R, Paulo E, Wu D, Wang Y, Swaney DL, Jimenez-Morales D, Krogan NJ, Wang B. Masand R, et al. Among authors: swaney dl. Cell Metab. 2018 Mar 6;27(3):616-629.e4. doi: 10.1016/j.cmet.2018.01.018. Cell Metab. 2018. PMID: 29514069 Free PMC article.

8

Sympathetic inputs regulate adaptive thermogenesis in brown adipose tissue through cAMP-Salt inducible kinase axis.

Paulo E, Wu D, Wang Y, Zhang Y, Wu Y, Swaney DL, Soucheray M, Jimenez-Morales D, Chawla A, Krogan NJ, Wang B. Paulo E, et al. Among authors: swaney dl. Sci Rep. 2018 Jul 20;8(1):11001. doi: 10.1038/s41598-018-29333-6. Sci Rep. 2018. PMID: 30030465 Free PMC article.

9

Multiple Routes to Oncogenesis Are Promoted by the Human Papillomavirus-Host Protein Network.

Eckhardt M, Zhang W, Gross AM, Von Dollen J, Johnson JR, Franks-Skiba KE, Swaney DL, Johnson TL, Jang GM, Shah PS, Brand TM, Archambault J, Kreisberg JF, Grandis JR, Ideker T, Krogan NJ. Eckhardt M, et al. Among authors: swaney dl. Cancer Discov. 2018 Nov;8(11):1474-1489. doi: 10.1158/2159-8290.CD-17-1018. Epub 2018 Sep 12. Cancer Discov. 2018. PMID: 30209081 Free PMC article.

10

Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function.

Orr AL, Kim C, Jimenez-Morales D, Newton BW, Johnson JR, Krogan NJ, Swaney DL, Mahley RW. Orr AL, et al. Among authors: swaney dl. J Alzheimers Dis. 2019;68(3):991-1011. doi: 10.3233/JAD-181184. J Alzheimers Dis. 2019. PMID: 30883359 Free PMC article.

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