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Page 1
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.
Baranasic D, Hörtenhuber M, Balwierz PJ, Zehnder T, Mukarram AK, Nepal C, Várnai C, Hadzhiev Y, Jimenez-Gonzalez A, Li N, Wragg J, D'Orazio FM, Relic D, Pachkov M, Díaz N, Hernández-Rodríguez B, Chen Z, Stoiber M, Dong M, Stevens I, Ross SE, Eagle A, Martin R, Obasaju O, Rastegar S, McGarvey AC, Kopp W, Chambers E, Wang D, Kim HR, Acemel RD, Naranjo S, Łapiński M, Chong V, Mathavan S, Peers B, Sauka-Spengler T, Vingron M, Carninci P, Ohler U, Lacadie SA, Burgess SM, Winata C, van Eeden F, Vaquerizas JM, Gómez-Skarmeta JL, Onichtchouk D, Brown BJ, Bogdanovic O, van Nimwegen E, Westerfield M, Wardle FC, Daub CO, Lenhard B, Müller F. Baranasic D, et al. Among authors: lacadie sa. Nat Genet. 2022 Jul;54(7):1037-1050. doi: 10.1038/s41588-022-01089-w. Epub 2022 Jul 4. Nat Genet. 2022. PMID: 35789323 Free PMC article.
JAMM: a peak finder for joint analysis of NGS replicates.
Ibrahim MM, Lacadie SA, Ohler U. Ibrahim MM, et al. Among authors: lacadie sa. Bioinformatics. 2015 Jan 1;31(1):48-55. doi: 10.1093/bioinformatics/btu568. Epub 2014 Sep 15. Bioinformatics. 2015. PMID: 25223640
Redundant regulation.
Lacadie SA, Ohler U. Lacadie SA, et al. Nat Ecol Evol. 2018 Mar;2(3):418-419. doi: 10.1038/s41559-018-0479-5. Nat Ecol Evol. 2018. PMID: 29379186 No abstract available.
Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos.
McGarvey AC, Kopp W, Vučićević D, Mattonet K, Kempfer R, Hirsekorn A, Bilić I, Gil M, Trinks A, Merks AM, Panáková D, Pombo A, Akalin A, Junker JP, Stainier DYR, Garfield D, Ohler U, Lacadie SA. McGarvey AC, et al. Among authors: lacadie sa. Cell Genom. 2022 Jan 13;2(1):100083. doi: 10.1016/j.xgen.2021.100083. eCollection 2022 Jan 12. Cell Genom. 2022. PMID: 36777038 Free PMC article.
PDGFRA is a conserved HAND2 effector during early cardiac development.
Xu Y, Gehlot R, Capon SJ, Albu M, Gretz J, Bloomekatz J, Mattonet K, Vucicevic D, Talyan S, Kikhi K, Günther S, Looso M, Firulli BA, Sanda M, Firulli AB, Lacadie SA, Yelon D, Stainier DYR. Xu Y, et al. Among authors: lacadie sa. Nat Cardiovasc Res. 2024 Dec;3(12):1531-1548. doi: 10.1038/s44161-024-00574-1. Epub 2024 Dec 10. Nat Cardiovasc Res. 2024. PMID: 39658721 Free PMC article.
Human promoters are intrinsically directional.
Duttke SHC, Lacadie SA, Ibrahim MM, Glass CK, Corcoran DL, Benner C, Heinz S, Kadonaga JT, Ohler U. Duttke SHC, et al. Among authors: lacadie sa. Mol Cell. 2015 Feb 19;57(4):674-684. doi: 10.1016/j.molcel.2014.12.029. Epub 2015 Jan 29. Mol Cell. 2015. PMID: 25639469 Free PMC article.
Perspectives on Unidirectional versus Divergent Transcription.
Duttke SH, Lacadie SA, Ibrahim MM, Glass CK, Corcoran DL, Benner C, Heinz S, Kadonaga JT, Ohler U. Duttke SH, et al. Among authors: lacadie sa. Mol Cell. 2015 Nov 5;60(3):348-9. doi: 10.1016/j.molcel.2015.10.014. Mol Cell. 2015. PMID: 26545075 Free PMC article. No abstract available.
FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells.
Kolundzic E, Ofenbauer A, Bulut SI, Uyar B, Baytek G, Sommermeier A, Seelk S, He M, Hirsekorn A, Vucicevic D, Akalin A, Diecke S, Lacadie SA, Tursun B. Kolundzic E, et al. Among authors: lacadie sa. Dev Cell. 2018 Sep 10;46(5):611-626.e12. doi: 10.1016/j.devcel.2018.07.006. Epub 2018 Aug 2. Dev Cell. 2018. PMID: 30078731 Free PMC article.
18 results