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JUNIPER: Reconstructing Transmission Events from Next-Generation Sequencing Data at Scale.
Specht I, Moreno GK, Brock-Fisher T, Krasilnikova LA, Petros BA, Pekar JE, Schifferli M, Fry B, Brown CM, Madoff LC, Burns M, Schaffner SF, Park DJ, MacInnis BL, Ozonoff A, Varilly P, Mitzenmacher MD, Sabeti PC. Specht I, et al. Among authors: mitzenmacher md. Res Sq [Preprint]. 2025 Mar 27:rs.3.rs-6264999. doi: 10.21203/rs.3.rs-6264999/v1. Res Sq. 2025. PMID: 40196005 Free PMC article. Preprint.
JUNIPER: Reconstructing Transmission Events from Next-Generation Sequencing Data at Scale.
Specht I, Moreno GK, Brock-Fisher T, Krasilnikova LA, Petros BA, Pekar JE, Schifferli M, Fry B, Brown CM, Madoff LC, Burns M, Schaffner SF, Park DJ, MacInnis BL, Ozonoff A, Varilly P, Mitzenmacher MD, Sabeti PC. Specht I, et al. Among authors: mitzenmacher md. medRxiv [Preprint]. 2025 Mar 5:2025.03.02.25323192. doi: 10.1101/2025.03.02.25323192. medRxiv. 2025. PMID: 40093219 Free PMC article. Preprint.
Inferring Viral Transmission Pathways from Within-Host Variation.
Specht IOA, Petros BA, Moreno GK, Brock-Fisher T, Krasilnikova LA, Schifferli M, Yang K, Cronan P, Glennon O, Schaffner SF, Park DJ, MacInnis BL, Ozonoff A, Fry B, Mitzenmacher MD, Varilly P, Sabeti PC. Specht IOA, et al. Among authors: mitzenmacher md. medRxiv [Preprint]. 2023 Oct 15:2023.10.14.23297039. doi: 10.1101/2023.10.14.23297039. medRxiv. 2023. PMID: 37873325 Free PMC article. Preprint.