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Page 1
Sugar-rich foods exacerbate antibiotic-induced microbiome injury.
Dai A, Adintori PA, Funnell T, Jogia WP, Fei T, Waters NR, Rangesa M, Ballweg A, Gipson B, Raj S, Hayase E, Markey KA, Burgos da Silva M, Miltiadous O, Brambilla CZ, Buchan ML, Peets T, Gradissimo A, Smith N, Katsamakis Z, Warren A, Amoretti LA, Duan C, Zhang C, Matheis F, Sullivan AP, Slingerland JB, Clurman A, Brereton DG, Giardina PA, Gomes ALC, Johnson AJ, Knights D, Jenq RR, Perales MA, Giralt SA, Schluter J, van den Brink MRM, Peled J. Dai A, et al. Among authors: funnell t. bioRxiv [Preprint]. 2024 Oct 14:2024.10.14.617881. doi: 10.1101/2024.10.14.617881. bioRxiv. 2024. PMID: 39463943 Free PMC article. Preprint.
Enhanced Feature Selection for Microbiome Data using FLORAL: Scalable Log-ratio Lasso Regression.
Fei T, Funnell T, Waters NR, Raj SS, Sadeghi K, Dai A, Miltiadous O, Shouval R, Lv M, Peled JU, Ponce DM, Perales MA, Gönen M, van den Brink MRM. Fei T, et al. Among authors: funnell t. bioRxiv [Preprint]. 2023 Dec 18:2023.05.02.538599. doi: 10.1101/2023.05.02.538599. bioRxiv. 2023. Update in: Cell Rep Methods. 2024 Nov 18;4(11):100899. doi: 10.1016/j.crmeth.2024.100899. PMID: 37205350 Free PMC article. Updated. Preprint.
Scalable log-ratio lasso regression for enhanced microbial feature selection with FLORAL.
Fei T, Funnell T, Waters NR, Raj SS, Baichoo M, Sadeghi K, Dai A, Miltiadous O, Shouval R, Lv M, Peled JU, Ponce DM, Perales MA, Gönen M, van den Brink MRM. Fei T, et al. Among authors: funnell t. Cell Rep Methods. 2024 Nov 18;4(11):100899. doi: 10.1016/j.crmeth.2024.100899. Epub 2024 Nov 7. Cell Rep Methods. 2024. PMID: 39515336 Free PMC article.
Pilot Trial of Homebound Hematopoietic Cell Transplantation.
Landau HJ, Orlando E, Rodriguez ES, Applebaum A, Mitchell HR, Peled JU, Khan N, Funnell T, Chung D, Scordo M, Shah GL, LeStrange NJ, Hambright KA, McElrath CM, Cazeau N, Devlin SM, Perales MA, Giralt SA. Landau HJ, et al. Among authors: funnell t. Transplant Cell Ther. 2022 Dec;28(12):832.e1-832.e7. doi: 10.1016/j.jtct.2022.09.014. Epub 2022 Sep 29. Transplant Cell Ther. 2022. PMID: 36182105 Free PMC article.
An inflammatory biomarker signature of response to CAR-T cell therapy in non-Hodgkin lymphoma.
Raj SS, Fei T, Fried S, Ip A, Fein JA, Leslie LA, Alarcon Tomas A, Leithner D, Peled JU, Corona M, Dahi PB, Danylesko I, Epstein-Peterson Z, Funnell T, Giralt SA, Jacoby E, Kedmi M, Landego I, Lin RJ, Parascondola A, Pascual L, Orozco N, Park JH, Palomba ML, Salles G, Saldia A, Schöder H, Sdayoor I, Shah GL, Scordo M, Shem-Tov N, Shimoni A, Slingerland J, Yerushalmi R, Nagler A, Greenbaum BD, Vickers AJ, Suh HC, Avigdor A, Perales MA, van den Brink MRM, Shouval R. Raj SS, et al. Among authors: funnell t. Nat Med. 2025 Apr;31(4):1183-1194. doi: 10.1038/s41591-025-03532-x. Epub 2025 Apr 1. Nat Med. 2025. PMID: 40169864 Free PMC article.
Single-cell mtDNA dynamics in tumors is driven by coregulation of nuclear and mitochondrial genomes.
Kim M, Gorelick AN, Vàzquez-García I, Williams MJ, Salehi S, Shi H, Weiner AC, Ceglia N, Funnell T, Park T, Boscenco S, O'Flanagan CH, Jiang H, Grewal D, Tang C, Rusk N, Gammage PA, McPherson A, Aparicio S, Shah SP, Reznik E. Kim M, et al. Among authors: funnell t. Nat Genet. 2024 May;56(5):889-899. doi: 10.1038/s41588-024-01724-8. Epub 2024 May 13. Nat Genet. 2024. PMID: 38741018 Free PMC article.
Ovarian cancer mutational processes drive site-specific immune evasion.
Vázquez-García I, Uhlitz F, Ceglia N, Lim JLP, Wu M, Mohibullah N, Niyazov J, Ruiz AEB, Boehm KM, Bojilova V, Fong CJ, Funnell T, Grewal D, Havasov E, Leung S, Pasha A, Patel DM, Pourmaleki M, Rusk N, Shi H, Vanguri R, Williams MJ, Zhang AW, Broach V, Chi DS, Da Cruz Paula A, Gardner GJ, Kim SH, Lennon M, Long Roche K, Sonoda Y, Zivanovic O, Kundra R, Viale A, Derakhshan FN, Geneslaw L, Issa Bhaloo S, Maroldi A, Nunez R, Pareja F, Stylianou A, Vahdatinia M, Bykov Y, Grisham RN, Liu YL, Lakhman Y, Nikolovski I, Kelly D, Gao J, Schietinger A, Hollmann TJ, Bakhoum SF, Soslow RA, Ellenson LH, Abu-Rustum NR, Aghajanian C, Friedman CF, McPherson A, Weigelt B, Zamarin D, Shah SP. Vázquez-García I, et al. Among authors: funnell t. Nature. 2022 Dec;612(7941):778-786. doi: 10.1038/s41586-022-05496-1. Epub 2022 Dec 14. Nature. 2022. PMID: 36517593 Free PMC article.
26 results